Intelligent imaging: Linking MR acquisition and processing    
     
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September 26, 2013

 
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7T MRI: A Game-Changer for Human Neuroscience

[1] Turner R (2013) ‘Where Matters’; in S. Geyer and R Turner, Microstructural Parcellation of the Human Cerebral Cortex, Springer, Heidelberg.
[2] Jones DK, Knösche TR and Turner R (2013) White matter integrity, fiber count, and other fallacies: the do's and don'ts of diffusion MRI. Neuroimage. Jun;73:239-54
[3] Turner R (2013) ‘MRI Methods for In-Vivo Cortical Parcellation’; in S. Geyer and R Turner, Microstructural Parcellation of the Human Cerebral Cortex, Springer, Heidelberg.
[4] Bazin PL, Weiss M, Dinse J, Schäfer A, Trampel R, Turner R. (2013) A computational framework for ultra-high resolution cortical segmentation at 7 Tesla. Neuroimage. Apr 25. doi:pii: S1053-8119[13]00332-7. 10.1016/j.neuroimage.2013.03.077. [Epub ahead of print]

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Dealing with motion in MRI in the image domain of k-space - why choose which?

1. Rousseau, F. et al. Registration-Based Approach for Reconstruction of High-Resolution In Utero Fetal MR Brain Images. Academic Radiology 13, 1072–1081 (2006).
2. Jiang, S. et al. MRI of moving subjects using multislice snapshot images with volume reconstruction (SVR): application to fetal, neonatal, and adult brain studies. IEEE Trans. Med. Imaging 26, 967–980 (2007).
3. Gholipour, A., Estroff, J. A. & Warfield, S. K. Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI. IEEE Trans. Med. Imaging 29, 1739–1758 (2010).
4. Kuklisova-Murgasova, M., Quaghebeur, G., Rutherford, M. A., Hajnal, J. V. & Schnabel, J. A. Reconstruction of fetal brain MRI with intensity matching and complete outlier removal. MEDICAL IMAGE ANALYSIS 16, 1550–1564 (2012).
5. Odille, F. et al. Model-based reconstruction for cardiac cine MRI without ECG or breath holding. Magnetic resonance in Medicine 63, 1247–1257 (2010).
6. Hansen, M. S., Sørensen, T. S., Arai, A. E. & Kellman, P. Retrospective reconstruction of high temporal resolution cine images from real-time MRI using iterative motion correction. Magnetic resonance in Medicine (2011). doi:10.1002/mrm.23284
7. Jansz, M. S. et al. Metric optimized gating for fetal cardiac MRI. Magnetic resonance in Medicine 64, 1304–1314 (2010).  

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Accelerated Imaging and Compressed Sensing in MRI

[1] K. P. Pruessmann, M. Weiger, M. B. Scheidegger, and P. Boesiger, ÒSENSE: sensitivity encoding for fast MRI.,Ó Magnetic resonance in medicine, vol. 42, no. 5, pp. 952-62, Nov. 1999
[2] K. P. Pruessmann, M. Weiger, P. Bšrnert, and P. Boesiger, ÒAdvances in sensitivity encoding with arbitrary k-space trajectories.,Ó Magnetic resonance in medicine, vol. 46, no. 4, pp. 638-51, Oct. 2001
[3] M. Lustig, D. Donoho, and J. M. Pauly, ÒSparse MRI: The application of compressed sensing for rapid MR imaging.,Ó Magnetic resonance in medicine?: official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, vol. 58, no. 6, pp. 1182-95, Dec. 2007
[4] A. Raj et al., ÒBayesian parallel imaging with edge-preserving priors.,Ó Magnetic resonance in medicine, vol. 57, no. 1, pp. 8-21, Jan. 2007
[5] J. Trzasko and A. Manduca, ÒHighly undersampled magnetic resonance image reconstruction via homotopic l(0) -minimization,Ó IEEE transactions on medical imaging, vol. 28, no. 1, pp. 106-21, Jan. 2009

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Spin saturation artifact with head motion

[1] K. J. Friston, S. Williams, R. Howard, R. S. Frackowiak, and R. Turner, žMovement-related effects in fMRI time-series,Ó Magn. Reson. Med. 35: 346 (1996)
[2] R. Bhagalia, B. Kim, Spin saturation artifact correction using slice-to-volume registration motion estimates for fMRI time series, Med. Phys. 35: 424 (2008)
[3] L. Muresan, R. Renken, J. B.T. M. Roerdink, and H. Duifhuis, žAutomated correction of spin-history related motion artefacts in fMRI: Simulated and phantom data,Ó IEEE Trans. Biomed. Eng. 52: 1450 (2005).
[4] J. Schulz, T. Siegert, E. Reimer, C. Labadie, J. Maclaren , M. Herbst, M. Zaitsev, R. Turner, An embedded optical tracking system for motion-corrected magnetic resonance imaging at 7T, Magn Reson Mater Phy 25:443 (2012)

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Superresolution Diffusion Magnetic Resonance Imaging

Clouchoux, C., A. J. du Plessis, M. Bouyssi-Kobar, W. Tworetzky, D. B. McElhinney, D. W. Brown, A. Gholipour, D. Kudelski, S. K. Warfield, R. J. McCarter, R. L. Robertson, Jr., A. C. Evans, J. W. Newburger, and C. Limperopoulos. 2012. Delayed Cortical Development in Fetuses with Complex Congenital Heart Disease. Cereb Cortex.

Clouchoux, C., D. Kudelski, A. Gholipour, S. K. Warfield, S. Viseur, M. Bouyssi-Kobar, J. L. Mari, A. C. Evans, A. J. du Plessis, and C. Limperopoulos. 2012. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct 217 (1):127-39.

Gholipour, A., A. Akhondi-Asl, J. A. Estroff, and S. K. Warfield. 2012. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage 60 (3):1819-31.

Gholipour, A., J. A. Estroff, C. E. Barnewolt, S. A. Connolly, and S. K. Warfield. 2011. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Comput Assist Radiol Surg 6 (3):329-39.

Gholipour, A., J. A. Estroff, M. Sahin, S. P. Prabhu, and S. K. Warfield. 2010. Maximum a posteriori estimation of isotropic high-resolution volumetric MRI from orthogonal thick-slice scans. Med Image Comput Comput Assist Interv 13 (Pt 2):109-16.

Gholipour, A., J. A. Estroff, and S. K. Warfield. 2010. Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI. IEEE Trans Med Imaging 29 (10):1739-58.

Gholipour, A., N. Kehtarnavaz, B. Scherrer, and S. K. Warfield. 2011. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc 2011:6997-7000.

Ruiz-Alzola, J., C. F. Westin, S. K. Warfield, C. Alberola, S. Maier, and R. Kikinis. 2002. Nonrigid registration of 3D tensor medical data. Med Image Anal 6 (2):143-61.

Scherrer, B., A.Gholipour, and S. K. Warfield. 2011. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv 14 (Pt 2):124-32.

Scherrer, B., A. Gholipour, and S. K. Warfield. 2012. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal 16 (7):1465-76.

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