WP_GENE_REGULATORY_NETWORK_MODELLING_SOMITOGENESIS Return to index
Order Gene Description ref_hepatocyte HepG2 HepG2.C3A HuH.7 SNU475 THLE liver
1 HES1 Transcription factor HES-1 [1] -0.67[2] -1.27[3] -0.76[4] -1.10[5] -2.50[6] -2.71[7]
2 NOTCH1 Neurogenic locus notch homolog protein 1 [8] 1.67[9] 2.41[10] 2.00[11] 2.76[12] 2.54[13] 3.32[14]
3 LFNG Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe [15] 2.21[16] 0.26[17] 0.97[18] -0.77[19] 0.43[20] -0.99[21]
4 DLL1 Delta-like protein 1 [22] -4.59[23] -1.49[24] -3.17[25] -6.61[26] -0.08[27] 1.20[28]
5 TBX6 T-box transcription factor TBX6 [29] 1.15[30] 4.13[31] 2.91[32] -0.39[33] -0.62[34] -2.12[35]
6 MESP2 Mesoderm posterior protein 2 [36] -2.92[37] -0.29[38] 1.42[39] 2.40[40] -0.20[41] -3.04[42]
7 EPHA4 Ephrin type-A receptor 4 [43] -5.03[44] -2.20[45] -3.27[46] 2.48[47] 6.07[48] 3.44[49]
8 FGF8 Fibroblast growth factor 8 [50] -3.56[51] -1.31[52] 1.44[53] -1.74[54] [55] 1.38[56]
9 HES7 Transcription factor HES-7 [57] 1.10[58] -0.28[59] 2.25[60] 0.43[61] 4.15[62] [63]
10 WNT3A Protein Wnt-3a [64] [65] [66] [67] [68] [69] [70]
11 RIPPLY2 Protein ripply2 [71] [72] [73] [74] [75] [76] [77]
[1]
ref_hepatocyte HES1
Mean 7.15
Standard deviation 5.3
Values 3.7 7 15 9.1 1
[2]
HepG2 HES1
Mean 11.7
Standard deviation 5.7
Values 7.7 16
[3]
HepG2.C3A HES1
Mean 1.84
Standard deviation 0.56
Values 1.4 2.2
[4]
HuH.7 HES1
Mean 8.41
Standard deviation 1.4
Values 9.7 8.7 6.9
[5]
SNU475 HES1
Mean 5.42
Standard deviation 0.41
Values 5.1 5.7
[6]
THLE HES1
Mean 3.42
Standard deviation 0.023
Values 3.4 3.4
[7]
liver HES1
Mean 3.86
Standard deviation 1.7
Values 2.2 3 6.2 4.1
[8]
ref_hepatocyte NOTCH1
Mean 0.644
Standard deviation 0.25
Values 0.55 0.89 0.91 0.33 0.55
[9]
HepG2 NOTCH1
Mean 5.33
Standard deviation 3.7
Values 2.7 8
[10]
HepG2.C3A NOTCH1
Mean 2.12
Standard deviation 0.1
Values 2.2 2.1
[11]
HuH.7 NOTCH1
Mean 5.14
Standard deviation 1.4
Values 3.6 6.4 5.4
[12]
SNU475 NOTCH1
Mean 7.09
Standard deviation 0.64
Values 7.5 6.6
[13]
THLE NOTCH1
Mean 10.2
Standard deviation 2.2
Values 8.6 12
[14]
liver NOTCH1
Mean 22.8
Standard deviation 16
Values 41 31 10 8.8
[15]
ref_hepatocyte LFNG
Mean 0.371
Standard deviation 0.36
Values 0.64 0.82 0.34 0.059 0
[16]
HepG2 LFNG
Mean 4.48
Standard deviation 0.77
Values 3.9 5
[17]
HepG2.C3A LFNG
Mean 0.275
Standard deviation 0.14
Values 0.38 0.17
[18]
HuH.7 LFNG
Mean 1.44
Standard deviation 1.1
Values 2.2 0.19 2
[19]
SNU475 LFNG
Mean 0.354
Standard deviation 0.1
Values 0.43 0.28
[20]
THLE LFNG
Mean 1.35
Standard deviation 0.078
Values 1.4 1.3
[21]
liver LFNG
Mean 0.658
Standard deviation 0.45
Values 1.1 1 0.21 0.33
[22]
ref_hepatocyte DLL1
Mean 0.139
Standard deviation 0.16
Values 0.22 0.098 0.38 0 0
[23]
HepG2 DLL1
Mean 0.015
Standard deviation 0.021
Values 0.03 0
[24]
HepG2.C3A DLL1
Mean 0.0307
Standard deviation 0.0021
Values 0.032 0.029
[25]
HuH.7 DLL1
Mean 0.0308
Standard deviation 0.012
Values 0.037 0.039 0.016
[26]
SNU475 DLL1
Mean 0.00232
Standard deviation 0.0033
Values 0 0.0046
[27]
THLE DLL1
Mean 0.356
Standard deviation 0.16
Values 0.47 0.24
[28]
liver DLL1
Mean 1.13
Standard deviation 0.35
Values 1.1 1.2 1.6 0.72
[29]
ref_hepatocyte TBX6
Mean 0.0885
Standard deviation 0.089
Values 0 0.089 0.16 0.2 0
[30]
HepG2 TBX6
Mean 0.509
Standard deviation 0.28
Values 0.31 0.7
[31]
HepG2.C3A TBX6
Mean 0.96
Standard deviation 0.4
Values 0.68 1.2
[32]
HuH.7 TBX6
Mean 1.32
Standard deviation 0.47
Values 1.7 0.79 1.5
[33]
SNU475 TBX6
Mean 0.11
Standard deviation 0.048
Values 0.076 0.14
[34]
THLE TBX6
Mean 0.156
Standard deviation 0.13
Values 0.25 0.064
[35]
liver TBX6
Mean 0.0717
Standard deviation 0.07
Values 0.079 0.043 0.16 0
[36]
ref_hepatocyte MESP2
Mean 0.0606
Standard deviation 0.059
Values 0.13 0.098 0 0 0.075
[37]
HepG2 MESP2
Mean 0.0207
Standard deviation 0.013
Values 0.03 0.011
[38]
HepG2.C3A MESP2
Mean 0.0307
Standard deviation 0.0021
Values 0.032 0.029
[39]
HuH.7 MESP2
Mean 0.323
Standard deviation 0.09
Values 0.39 0.35 0.22
[40]
SNU475 MESP2
Mean 0.522
Standard deviation 0.28
Values 0.72 0.32
[41]
THLE MESP2
Mean 0.143
Standard deviation 0.061
Values 0.1 0.19
[42]
liver MESP2
Mean 0.026
Standard deviation 0.0021
Values 0.026 0.029 0.024 0.026
[43]
ref_hepatocyte EPHA4
Mean 0.036
Standard deviation 0.033
Values 0.054 0.057 0.069 0 0
[44]
HepG2 EPHA4
Mean 0.00287
Standard deviation 0.0041
Values 0 0.0057
[45]
HepG2.C3A EPHA4
Mean 0.00486
Standard deviation 0.0069
Values 0 0.0097
[46]
HuH.7 EPHA4
Mean 0.0074
Standard deviation 0.0066
Values 0.0094 0.013 0
[47]
SNU475 EPHA4
Mean 0.328
Standard deviation 0.25
Values 0.51 0.15
[48]
THLE EPHA4
Mean 6.54
Standard deviation 0.72
Values 6 7
[49]
liver EPHA4
Mean 1.38
Standard deviation 0.76
Values 2 2 0.71 0.74
[50]
ref_hepatocyte FGF8
Mean 0.0195
Standard deviation 0.044
Values 0 0.098 0 0 0
[51]
HepG2 FGF8
Mean 0.00429
Standard deviation 0.0061
Values 0.0086 0
[52]
HepG2.C3A FGF8
Mean 0.00486
Standard deviation 0.0069
Values 0 0.0097
[53]
HuH.7 FGF8
Mean 0.105
Standard deviation 0.073
Values 0.075 0.051 0.19
[54]
SNU475 FGF8
Mean 0.00949
Standard deviation 0.0063
Values 0.0051 0.014
[55]
THLE FGF8
Mean 0
Standard deviation 0
Values 0 0
[56]
liver FGF8
Mean 0.18
Standard deviation 0.14
Values 0.25 0.34 0.047 0.077
[57]
ref_hepatocyte HES7
Mean 0.019
Standard deviation 0.043
Values 0.095 0 0 0 0
[58]
HepG2 HES7
Mean 0.106
Standard deviation 0.053
Values 0.069 0.14
[59]
HepG2.C3A HES7
Mean 0.00972
Standard deviation 0.014
Values 0 0.019
[60]
HuH.7 HES7
Mean 0.179
Standard deviation 0.09
Values 0.18 0.27 0.09
[61]
SNU475 HES7
Mean 0.0418
Standard deviation 0.02
Values 0.056 0.028
[62]
THLE HES7
Mean 0.914
Standard deviation 0.25
Values 1.1 0.74
[63]
liver HES7
Mean 0
Standard deviation 0
Values 0 0 0 0
[64]
ref_hepatocyte WNT3A
Mean 0
Standard deviation 0
Values 0 0 0 0 0
[65]
HepG2 WNT3A
Mean 0.0093
Standard deviation 0.005
Values 0.013 0.0057
[66]
HepG2.C3A WNT3A
Mean 0
Standard deviation 0
Values 0 0
[67]
HuH.7 WNT3A
Mean 0
Standard deviation 0
Values 0 0 0
[68]
SNU475 WNT3A
Mean 0.00485
Standard deviation 0.0003
Values 0.0051 0.0046
[69]
THLE WNT3A
Mean 0.00266
Standard deviation 0.0038
Values 0 0.0053
[70]
liver WNT3A
Mean 0.0165
Standard deviation 0.033
Values 0.066 0 0 0
[71]
ref_hepatocyte RIPPLY2
Mean 0
Standard deviation 0
Values 0 0 0 0 0
[72]
HepG2 RIPPLY2
Mean 0.00287
Standard deviation 0.0041
Values 0 0.0057
[73]
HepG2.C3A RIPPLY2
Mean 0
Standard deviation 0
Values 0 0
[74]
HuH.7 RIPPLY2
Mean 0
Standard deviation 0
Values 0 0 0
[75]
SNU475 RIPPLY2
Mean 0.0125
Standard deviation 0.011
Values 0.02 0.0046
[76]
THLE RIPPLY2
Mean 0.0618
Standard deviation 0.0046
Values 0.065 0.059
[77]
liver RIPPLY2
Mean 0
Standard deviation 0
Values 0 0 0 0