WP_CYTOSINE_METHYLATION Return to index
Order Gene Description ref_hepatocyte HepG2 HepG2.C3A HuH.7 SNU475 THLE liver
1 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial [1] -1.30[2] -2.10[3] -2.39[4] -1.78[5] -2.91[6] -0.07[7]
2 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic [8] 0.21[9] 0.52[10] 0.85[11] -0.52[12] -1.30[13] -0.25[14]
3 MBD3 Methyl-CpG-binding domain protein 3 [15] 1.19[16] 1.32[17] -0.25[18] 0.73[19] 1.93[20] 0.15[21]
4 TDG G/T mismatch-specific thymine DNA glycosylase [22] 0.40[23] 0.99[24] -0.01[25] 2.56[26] 2.13[27] 0.15[28]
5 MECP2 Methyl-CpG-binding protein 2 [29] 1.45[30] 1.30[31] 0.76[32] 2.63[33] 2.94[34] 1.07[35]
6 DNMT1 DNA (cytosine-5)-methyltransferase 1 [36] 3.69[37] 2.77[38] 2.91[39] 4.14[40] 5.00[41] 1.32[42]
7 TET3 Methylcytosine dioxygenase TET3 [43] 2.55[44] 3.10[45] 1.81[46] 3.91[47] 3.35[48] 2.42[49]
8 TET2 Methylcytosine dioxygenase TET2 [50] 2.52[51] 3.31[52] 2.98[53] 4.56[54] 4.70[55] 4.22[56]
9 TET1 Methylcytosine dioxygenase TET1 [57] 3.94[58] 5.16[59] 3.52[60] 4.85[61] 2.56[62] 3.05[63]
[1]
ref_hepatocyte IDH2
Mean 157
Standard deviation 1.1e+02
Values 30 2.4e+02 2.6e+02 2e+02 52
[2]
HepG2 IDH2
Mean 85
Standard deviation 1.2
Values 84 86
[3]
HepG2.C3A IDH2
Mean 59.2
Standard deviation 12
Values 51 68
[4]
HuH.7 IDH2
Mean 77.5
Standard deviation 6.5
Values 79 70 83
[5]
SNU475 IDH2
Mean 40.8
Standard deviation 22
Values 26 56
[6]
THLE IDH2
Mean 18.2
Standard deviation 1.2
Values 17 19
[7]
liver IDH2
Mean 181
Standard deviation 68
Values 1.4e+02 1.1e+02 2.1e+02 2.6e+02
[8]
ref_hepatocyte IDH1
Mean 120
Standard deviation 80
Values 23 1.8e+02 1.2e+02 2.1e+02 57
[9]
HepG2 IDH1
Mean 186
Standard deviation 83
Values 2.4e+02 1.3e+02
[10]
HepG2.C3A IDH1
Mean 278
Standard deviation 72
Values 3.3e+02 2.3e+02
[11]
HuH.7 IDH1
Mean 559
Standard deviation 1.1e+02
Values 6.5e+02 4.4e+02 5.8e+02
[12]
SNU475 IDH1
Mean 74.8
Standard deviation 19
Values 61 88
[13]
THLE IDH1
Mean 42.2
Standard deviation 1.1
Values 43 41
[14]
liver IDH1
Mean 121
Standard deviation 35
Values 74 1.2e+02 1.4e+02 1.5e+02
[15]
ref_hepatocyte MBD3
Mean 11.4
Standard deviation 5.6
Values 6.3 15 19 8.1 7.9
[16]
HepG2 MBD3
Mean 34.7
Standard deviation 1.3
Values 36 34
[17]
HepG2.C3A MBD3
Mean 45.9
Standard deviation 2.1
Values 47 44
[18]
HuH.7 MBD3
Mean 24.7
Standard deviation 6.3
Values 30 18 26
[19]
SNU475 MBD3
Mean 16.8
Standard deviation 2
Values 15 18
[20]
THLE MBD3
Mean 37.5
Standard deviation 1.7
Values 36 39
[21]
liver MBD3
Mean 15.2
Standard deviation 4.2
Values 20 17 13 11
[22]
ref_hepatocyte TDG
Mean 5.86
Standard deviation 3.8
Values 4.6 2.1 3.2 8 11
[23]
HepG2 TDG
Mean 10.4
Standard deviation 2.7
Values 12 8.5
[24]
HepG2.C3A TDG
Mean 18.9
Standard deviation 2.3
Values 20 17
[25]
HuH.7 TDG
Mean 15.1
Standard deviation 1.1
Values 16 14 15
[26]
SNU475 TDG
Mean 30.9
Standard deviation 3.6
Values 28 33
[27]
THLE TDG
Mean 22.3
Standard deviation 2.4
Values 21 24
[28]
liver TDG
Mean 7.85
Standard deviation 2.4
Values 5.6 6 9.6 10
[29]
ref_hepatocyte MECP2
Mean 4.65
Standard deviation 3.2
Values 9 3.6 6.8 0.97 2.9
[30]
HepG2 MECP2
Mean 17
Standard deviation 0.35
Values 17 17
[31]
HepG2.C3A MECP2
Mean 18.5
Standard deviation 2.1
Values 17 20
[32]
HuH.7 MECP2
Mean 20.4
Standard deviation 2.7
Values 19 19 24
[33]
SNU475 MECP2
Mean 25.6
Standard deviation 3.5
Values 23 28
[34]
THLE MECP2
Mean 30.9
Standard deviation 2.7
Values 29 33
[35]
liver MECP2
Mean 11.7
Standard deviation 2.4
Values 14 9.6 14 9.8
[36]
ref_hepatocyte DNMT1
Mean 3.28
Standard deviation 1.4
Values 3.3 1.6 2.4 5.2 3.9
[37]
HepG2 DNMT1
Mean 56.5
Standard deviation 6.2
Values 61 52
[38]
HepG2.C3A DNMT1
Mean 36.1
Standard deviation 9.3
Values 43 30
[39]
HuH.7 DNMT1
Mean 63.9
Standard deviation 30
Values 76 30 86
[40]
SNU475 DNMT1
Mean 51.7
Standard deviation 9.8
Values 59 45
[41]
THLE DNMT1
Mean 91.2
Standard deviation 13
Values 82 1e+02
[42]
liver DNMT1
Mean 9.87
Standard deviation 1
Values 9.5 11 8.6 11
[43]
ref_hepatocyte TET3
Mean 1.18
Standard deviation 1.3
Values 1.7 0.37 0.24 3.3 0.31
[44]
HepG2 TET3
Mean 9.3
Standard deviation 0.65
Values 8.8 9.8
[45]
HepG2.C3A TET3
Mean 16.4
Standard deviation 1.1
Values 17 16
[46]
HuH.7 TET3
Mean 10.7
Standard deviation 2.4
Values 8.1 11 13
[47]
SNU475 TET3
Mean 15.8
Standard deviation 3
Values 14 18
[48]
THLE TET3
Mean 10.5
Standard deviation 1.2
Values 9.7 11
[49]
liver TET3
Mean 7.65
Standard deviation 3.8
Values 12 10 4.8 4
[50]
ref_hepatocyte TET2
Mean 0.442
Standard deviation 0.2
Values 0.42 0.51 0.28 0.74 0.26
[51]
HepG2 TET2
Mean 3.4
Standard deviation 1.2
Values 4.2 2.6
[52]
HepG2.C3A TET2
Mean 7.08
Standard deviation 1.6
Values 8.2 5.9
[53]
HuH.7 TET2
Mean 9.05
Standard deviation 3.6
Values 5.4 13 9.1
[54]
SNU475 TET2
Mean 9.31
Standard deviation 1.4
Values 8.3 10
[55]
THLE TET2
Mean 9.99
Standard deviation 0.12
Values 10 9.9
[56]
liver TET2
Mean 9.9
Standard deviation 5.2
Values 15 13 7.1 4.1
[57]
ref_hepatocyte TET1
Mean 0.203
Standard deviation 0.31
Values 0.1 0.13 0 0.75 0.036
[58]
HepG2 TET1
Mean 4.16
Standard deviation 2.6
Values 6 2.3
[59]
HepG2.C3A TET1
Mean 11.8
Standard deviation 1.3
Values 13 11
[60]
HuH.7 TET1
Mean 6.06
Standard deviation 2.7
Values 2.9 8.1 7.1
[61]
SNU475 TET1
Mean 5.23
Standard deviation 0.9
Values 4.6 5.9
[62]
THLE TET1
Mean 1.04
Standard deviation 0.37
Values 1.3 0.78
[63]
liver TET1
Mean 2.03
Standard deviation 0.59
Values 2.7 2.3 2 1.3