WP_7Q1123_COPY_NUMBER_VARIATION_SYNDROME | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | [1] | 0.06[2] | -0.18[3] | 0.32[4] | -0.20[5] | -0.10[6] | -0.59[7] |
2 | SQSTM1 | Sequestosome-1 | [8] | -1.66[9] | -2.69[10] | -2.43[11] | -0.85[12] | -1.08[13] | -1.31[14] |
3 | ATF4 | Cyclic AMP-dependent transcription factor ATF-4 | [15] | -1.07[16] | 0.05[17] | -0.34[18] | -2.70[19] | -1.41[20] | -1.73[21] |
4 | CFL1 | Cofilin-1 | [22] | -0.16[23] | -1.17[24] | -1.48[25] | -0.15[26] | -0.22[27] | -0.46[28] |
5 | HMGA1 | High mobility group protein HMG-I/HMG-Y | [29] | 0.84[30] | -0.20[31] | -0.01[32] | -0.45[33] | 0.56[34] | -4.39[35] |
6 | CLDN1 | Claudin-1 | [36] | -1.15[37] | -0.62[38] | 0.82[39] | -5.18[40] | -2.60[41] | 0.38[42] |
7 | EIF4H | Eukaryotic translation initiation factor 4H | [43] | 0.92[44] | 0.47[45] | 0.33[46] | 1.28[47] | 0.78[48] | 0.68[49] |
8 | CTNNB1 | Catenin beta-1 | [50] | 1.72[51] | 1.23[52] | 1.83[53] | 1.08[54] | 1.16[55] | 1.59[56] |
9 | UBE2L6 | Ubiquitin/ISG15-conjugating enzyme E2 L6 | [57] | -1.65[58] | -4.12[59] | -2.75[60] | -0.73[61] | -1.44[62] | -0.21[63] |
10 | PCNA | Proliferating cell nuclear antigen | [64] | 0.99[65] | 0.99[66] | -0.71[67] | 0.11[68] | 0.24[69] | -2.59[70] |
11 | VPS28 | Vacuolar protein sorting-associated protein 28 homolog | [71] | -2.27[72] | -1.56[73] | -1.50[74] | -1.36[75] | -2.55[76] | -1.12[77] |
12 | DLD | Dihydrolipoyl dehydrogenase, mitochondrial | [78] | -1.04[79] | -0.31[80] | -0.76[81] | 0.05[82] | -0.63[83] | 0.57[84] |
13 | CLTC | Clathrin heavy chain 1 | [85] | 1.72[86] | 1.83[87] | 1.71[88] | 2.00[89] | 2.00[90] | 2.94[91] |
14 | MYC | Myc proto-oncogene protein | [92] | 0.53[93] | 0.21[94] | -2.11[95] | -2.47[96] | -0.24[97] | -1.51[98] |
15 | GTF2I | General transcription factor II-I | [99] | -1.37[100] | -1.76[101] | -1.55[102] | -0.31[103] | -1.45[104] | -0.25[105] |
16 | DDX21 | Nucleolar RNA helicase 2 | [106] | 0.84[107] | 1.78[108] | 0.96[109] | 0.99[110] | 1.14[111] | 0.53[112] |
17 | BECN1 | Beclin-1 | [113] | -0.74[114] | -0.93[115] | -1.28[116] | -1.03[117] | -1.20[118] | -0.57[119] |
18 | SF3B1 | Splicing factor 3B subunit 1 | [120] | 1.10[121] | 2.52[122] | 1.49[123] | 1.78[124] | 1.39[125] | 2.17[126] |
19 | DEK | Protein DEK | [127] | 0.01[128] | 1.77[129] | 0.37[130] | 1.42[131] | 1.08[132] | -0.10[133] |
20 | MLXIPL | Carbohydrate-responsive element-binding protein | [134] | -1.76[135] | 0.65[136] | -1.61[137] | -7.64[138] | -6.04[139] | 2.02[140] |
21 | UBE2E1 | Ubiquitin-conjugating enzyme E2 E1 | [141] | -0.86[142] | -0.60[143] | -0.18[144] | -0.16[145] | -0.04[146] | -2.33[147] |
22 | ATPAF1 | ATP synthase mitochondrial F1 complex assembly factor 1 | [148] | -1.09[149] | -0.97[150] | -1.80[151] | -1.39[152] | -0.78[153] | 0.00[154] |
23 | GRB2 | Growth factor receptor-bound protein 2 | [155] | 1.30[156] | 1.15[157] | 0.98[158] | 0.88[159] | 0.65[160] | 0.78[161] |
24 | TSG101 | Tumor susceptibility gene 101 protein | [162] | -0.18[163] | 0.19[164] | -0.30[165] | 0.02[166] | -0.93[167] | -0.43[168] |
25 | DLST | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial | 0.56[169] | 1.08[170] | -0.28[171] | 0.62[172] | 0.59[173] | -0.07[174] | |
26 | EIF2A | Eukaryotic translation initiation factor 2A | [175] | 0.09[176] | 1.62[177] | 1.24[178] | 0.43[179] | 0.24[180] | 0.56[181] |
27 | UBE2E3 | Ubiquitin-conjugating enzyme E2 E3 | [182] | 0.21[183] | 0.20[184] | -0.22[185] | 0.23[186] | -0.02[187] | -0.39[188] |
28 | MYO1C | Unconventional myosin-Ic | [189] | 1.61[190] | 0.93[191] | 0.89[192] | 1.98[193] | 1.70[194] | 1.57[195] |
29 | BCL7B | B-cell CLL/lymphoma 7 protein family member B | [196] | -0.79[197] | -1.09[198] | -1.78[199] | -0.06[200] | -0.67[201] | -0.46[202] |
30 | CLDN3 | Claudin-3 | [203] | -5.41[204] | -2.11[205] | -3.83[206] | -4.22[207] | -9.57[208] | -0.56[209] |
31 | HDAC3 | Histone deacetylase 3 | [210] | 0.58[211] | 0.65[212] | 0.17[213] | 0.27[214] | 0.29[215] | 0.08[216] |
32 | USF1 | Upstream stimulatory factor 1 | [217] | -1.01[218] | -0.68[219] | -0.05[220] | 0.05[221] | -0.28[222] | -0.25[223] |
33 | FAS | Tumor necrosis factor receptor superfamily member 6 | [224] | -1.50[225] | -0.70[226] | -9.00[227] | -1.42[228] | -1.05[229] | -1.24[230] |
34 | OGDH | 2-oxoglutarate dehydrogenase, mitochondrial | [231] | 0.84[232] | 0.25[233] | 0.86[234] | 1.36[235] | 1.16[236] | 1.77[237] |
35 | RFC2 | Replication factor C subunit 2 | [238] | -0.16[239] | -0.29[240] | -0.54[241] | 0.50[242] | 0.82[243] | -0.29[244] |
36 | CLDN4 | Claudin-4 | [245] | 1.73[246] | 0.86[247] | -3.91[248] | 0.04[249] | -6.65[250] | -3.29[251] |
37 | BAZ1B | Tyrosine-protein kinase BAZ1B | [252] | 1.31[253] | 1.54[254] | 1.20[255] | 2.53[256] | 2.29[257] | 1.74[258] |
38 | NUP62 | Nuclear pore glycoprotein p62 | [259] | 1.27[260] | 0.90[261] | 1.66[262] | 1.53[263] | 1.47[264] | 0.90[265] |
39 | TBL2 | Transducin beta-like protein 2 | [266] | 0.61[267] | 0.97[268] | 0.20[269] | 1.20[270] | 0.20[271] | 0.66[272] |
40 | PKLR | Pyruvate kinase PKLR | [273] | -1.77[274] | 0.13[275] | -1.89[276] | -9.85[277] | -9.90[278] | 1.44[279] |
41 | VAMP2 | Vesicle-associated membrane protein 2 | [280] | -1.25[281] | -0.87[282] | -0.81[283] | -0.14[284] | -0.48[285] | 0.29[286] |
42 | HDAC2 | Histone deacetylase 2 | [287] | 1.82[288] | 3.17[289] | 2.25[290] | 2.48[291] | 2.48[292] | 0.68[293] |
43 | BRD4 | Bromodomain-containing protein 4 | [294] | 1.43[295] | 0.81[296] | 1.18[297] | 0.85[298] | 1.35[299] | 1.35[300] |
44 | HDAC6 | Histone deacetylase 6 | [301] | 0.76[302] | 1.72[303] | 1.52[304] | 0.60[305] | -0.07[306] | 2.64[307] |
45 | SMARCA5 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfa | 1.42[308] | 2.01[309] | 2.02[310] | 2.17[311] | 2.60[312] | 2.03[313] | |
46 | MYBBP1A | Myb-binding protein 1A | [314] | 2.00[315] | 1.23[316] | 1.11[317] | 1.26[318] | 1.32[319] | 0.97[320] |
47 | ATPAF2 | ATP synthase mitochondrial F1 complex assembly factor 2 | [321] | -1.06[322] | -1.63[323] | -1.01[324] | -1.32[325] | -1.22[326] | -0.11[327] |
48 | RFC5 | Replication factor C subunit 5 | [328] | 0.23[329] | 0.71[330] | 0.61[331] | 0.59[332] | 0.97[333] | -0.39[334] |
49 | ACACB | Acetyl-CoA carboxylase 2 | [335] | -0.77[336] | 0.22[337] | 0.05[338] | -1.44[339] | -1.30[340] | 4.67[341] |
50 | VPS37A | Vacuolar protein sorting-associated protein 37A | [342] | -0.05[343] | 1.20[344] | 1.26[345] | 0.58[346] | 0.66[347] | 1.59[348] |
51 | UBIAD1 | UbiA prenyltransferase domain-containing protein 1 | [349] | 0.94[350] | 1.52[351] | -0.06[352] | -0.46[353] | -0.02[354] | 0.75[355] |
52 | DNAJC30 | DnaJ homolog subfamily C member 30 | [356] | -0.36[357] | -0.91[358] | -1.07[359] | -0.23[360] | -0.91[361] | 0.28[362] |
53 | MAPK3 | Mitogen-activated protein kinase 3 | [363] | 1.95[364] | 2.01[365] | 1.76[366] | 0.75[367] | 0.62[368] | -0.56[369] |
54 | VPS37C | Vacuolar protein sorting-associated protein 37C | [370] | 0.50[371] | 0.40[372] | 0.26[373] | 0.61[374] | 0.16[375] | -0.50[376] |
55 | EIF2AK3 | Eukaryotic translation initiation factor 2-alpha kinase 3 | [377] | 0.64[378] | 1.48[379] | 1.36[380] | 0.51[381] | 0.90[382] | 2.24[383] |
56 | ULK1 | Serine/threonine-protein kinase ULK1 | [384] | 1.41[385] | 1.71[386] | 2.62[387] | 2.30[388] | 1.50[389] | 2.38[390] |
57 | VPS37B | Vacuolar protein sorting-associated protein 37B | [391] | 1.12[392] | 0.92[393] | 0.51[394] | 1.46[395] | 1.57[396] | -0.30[397] |
58 | RB1 | Retinoblastoma-associated protein | [398] | 1.32[399] | 1.84[400] | 2.11[401] | 2.60[402] | 2.78[403] | 1.96[404] |
59 | ABHD11 | Protein ABHD11 | [405] | -0.50[406] | -0.30[407] | -1.19[408] | 0.27[409] | 0.08[410] | -0.26[411] |
60 | ACACA | Acetyl-CoA carboxylase 1 | [412] | 2.55[413] | 2.91[414] | 3.54[415] | 2.90[416] | 1.95[417] | 3.84[418] |
61 | LIMK1 | LIM domain kinase 1 | [419] | 2.40[420] | 1.32[421] | 0.60[422] | 3.83[423] | 1.92[424] | -1.00[425] |
62 | CLASP1 | CLIP-associating protein 1 | [426] | 2.64[427] | 2.65[428] | 2.05[429] | 2.84[430] | 2.75[431] | 3.40[432] |
63 | GTF2IRD1 | General transcription factor II-I repeat domain-containing protein 1 | [433] | 2.06[434] | 1.74[435] | 1.28[436] | 1.93[437] | 1.45[438] | 0.42[439] |
64 | CLASP2 | CLIP-associating protein 2 | [440] | 1.95[441] | 2.24[442] | 3.17[443] | 2.63[444] | 2.83[445] | 3.00[446] |
65 | CLIP2 | CAP-Gly domain-containing linker protein 2 | [447] | 3.63[448] | 2.98[449] | 3.50[450] | 3.08[451] | 1.84[452] | 0.89[453] |
66 | FBLN5 | Fibulin-5 | [454] | -3.22[455] | -1.18[456] | 2.31[457] | -0.72[458] | 0.17[459] | 2.70[460] |
67 | NRG1 | Pro-neuregulin-1, membrane-bound isoform | [461] | 0.43[462] | -5.68[463] | -3.09[464] | 2.37[465] | -5.25[466] | 1.25[467] |
68 | LAT2 | Linker for activation of T-cells family member 2 | [468] | -1.57[469] | -0.82[470] | -4.45[471] | -1.82[472] | -2.62[473] | 0.98[474] |
69 | TRIM50 | E3 ubiquitin-protein ligase TRIM50 | [475] | 0.67[476] | 0.62[477] | -6.45[478] | -5.82[479] | -9.44[480] | -2.05[481] |
70 | VPS37D | Vacuolar protein sorting-associated protein 37D | [482] | -0.07[483] | 2.13[484] | -0.55[485] | 0.51[486] | -1.10[487] | -1.15[488] |
71 | CHTF18 | Chromosome transmission fidelity protein 18 homolog | [489] | 1.51[490] | 2.36[491] | 2.66[492] | 1.67[493] | 2.34[494] | 0.21[495] |
72 | CLDN5 | Claudin-5 | [496] | -3.57[497] | -3.10[498] | -5.36[499] | -6.47[500] | -3.94[501] | 3.29[502] |
73 | STX1A | Syntaxin-1A | [503] | 1.04[504] | 1.03[505] | -0.76[506] | 2.92[507] | 1.78[508] | -0.68[509] |
74 | ERCC6 | DNA excision repair protein ERCC-6 | [510] | 1.39[511] | 2.18[512] | 0.04[513] | 3.64[514] | 2.57[515] | 3.71[516] |
75 | HSPA2 | Heat shock-related 70 kDa protein 2 | [517] | -2.34[518] | -2.65[519] | 1.98[520] | 3.55[521] | 3.01[522] | 2.55[523] |
76 | ELN | Elastin | [524] | -1.64[525] | 0.61[526] | -8.05[527] | -1.77[528] | -3.67[529] | 3.86[530] |
77 | CDKN1C | Cyclin-dependent kinase inhibitor 1C | [531] | [532] | -5.14[533] | 1.27[534] | 1.49[535] | 0.72[536] | 1.95[537] |
78 | BTK | Tyrosine-protein kinase BTK | [538] | -7.28[539] | [540] | -0.71[541] | -2.69[542] | -5.06[543] | 2.31[544] |
79 | SNAP25 | Synaptosomal-associated protein 25 | [545] | -3.40[546] | -3.18[547] | 2.20[548] | 2.78[549] | 4.68[550] | 1.52[551] |
80 | FBN1 | Fibrillin-1 | [552] | 3.16[553] | 1.25[554] | 3.50[555] | 6.66[556] | 9.48[557] | 7.88[558] |
81 | FZD9 | Frizzled-9 | [559] | 1.52[560] | 1.73[561] | 1.18[562] | 2.46[563] | 0.01[564] | 0.09[565] |
82 | FBLN2 | Fibulin-2 | [566] | 2.76[567] | -2.37[568] | 0.37[569] | 7.45[570] | 8.80[571] | 5.18[572] |
83 | PRKG1 | cGMP-dependent protein kinase 1 | [573] | -0.06[574] | [575] | 1.05[576] | 3.50[577] | 5.27[578] | 6.99[579] |
84 | WNT2 | Protein Wnt-2 | [580] | [581] | [582] | -2.18[583] | 1.26[584] | -2.82[585] | 6.70[586] |
85 | HOXC8 | Homeobox protein Hox-C8 | [587] | 0.13[588] | 0.27[589] | 5.39[590] | 7.93[591] | 5.55[592] | -0.49[593] |
86 | GRIP1 | Glutamate receptor-interacting protein 1 | [594] | 3.51[595] | 1.59[596] | 1.18[597] | 8.24[598] | 5.62[599] | 4.76[600] |
87 | METTL27 | Methyltransferase-like protein 27 | [601] | [602] | [603] | [604] | [605] | [606] | [607] |
88 | ATP5F1B | [608] | [609] | [610] | [611] | [612] | [613] | [614] | |
89 | H2AX | [615] | [616] | [617] | [618] | [619] | [620] | [621] | |
90 | FKBP6 | Inactive peptidyl-prolyl cis-trans isomerase FKBP6 | [622] | [623] | [624] | [625] | [626] | [627] | [628] |
91 | MVB12A | Multivesicular body subunit 12A | [629] | [630] | [631] | [632] | [633] | [634] | [635] |
92 | ATP5PB | [636] | [637] | [638] | [639] | [640] | [641] | [642] | |
93 | ATP5MC2 | [643] | [644] | [645] | [646] | [647] | [648] | [649] | |
94 | MIR590 | [650] | [651] | [652] | [653] | [654] | [655] | [656] | |
95 | TMEM270 | Transmembrane protein 270 | [657] | [658] | [659] | [660] | [661] | [662] | [663] |
96 | MIR4284 | [664] | [665] | [666] | [667] | [668] | [669] | [670] | |
97 | BUD23 | Probable 18S rRNA (guanine-N(7))-methyltransferase | [671] | [672] | [673] | [674] | [675] | [676] | [677] |
98 | ATP5F1D | [678] | [679] | [680] | [681] | [682] | [683] | [684] | |
99 | ATP5PO | [685] | [686] | [687] | [688] | [689] | [690] | [691] | |
100 | ATP5MC1 | [692] | [693] | [694] | [695] | [696] | [697] | [698] | |
101 | ATP5MC3 | [699] | [700] | [701] | [702] | [703] | [704] | [705] | |
102 | MT-ATP6 | ATP synthase subunit a | [706] | [707] | [708] | [709] | [710] | [711] | [712] |
103 | ATP5F1E | [713] | [714] | [715] | [716] | [717] | [718] | [719] | |
104 | ATP5F1A | [720] | [721] | [722] | [723] | [724] | [725] | [726] | |
105 | MT-ATP8 | ATP synthase protein 8 | [727] | [728] | [729] | [730] | [731] | [732] | [733] |
106 | VPS9D1 | VPS9 domain-containing protein 1 | [734] | [735] | [736] | [737] | [738] | [739] | [740] |