REACTOME_NUCLEOTIDE_EXCISION_REPAIR |
Return to index |
|
|
|
|
|
Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
ACTB |
Actin, cytoplasmic 1 |
[1] |
-0.35[2] |
-0.99[3] |
-0.60[4] |
0.08[5] |
-0.34[6] |
0.09[7] |
2 |
UBB |
Polyubiquitin-B |
[8] |
-1.16[9] |
-1.31[10] |
-1.40[11] |
-1.71[12] |
-1.28[13] |
-0.61[14] |
3 |
RPS27A |
Ubiquitin-40S ribosomal protein S27a |
[15] |
[16] |
[17] |
[18] |
[19] |
[20] |
[21] |
4 |
UBC |
Polyubiquitin-C |
[22] |
-0.72[23] |
-0.56[24] |
-1.04[25] |
-0.86[26] |
-0.90[27] |
-0.15[28] |
5 |
HMGN1 |
Non-histone chromosomal protein HMG-14 |
[29] |
-1.62[30] |
-1.53[31] |
-1.91[32] |
-1.73[33] |
-1.60[34] |
-2.72[35] |
6 |
SUMO1 |
Small ubiquitin-related modifier 1 |
[36] |
-0.56[37] |
-0.36[38] |
-0.96[39] |
-0.40[40] |
-0.48[41] |
-0.27[42] |
7 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[43] |
-1.44[44] |
-1.40[45] |
-1.87[46] |
-1.13[47] |
-1.22[48] |
-0.07[49] |
8 |
SUMO2 |
Small ubiquitin-related modifier 2 |
[50] |
1.07[51] |
1.33[52] |
1.12[53] |
0.43[54] |
0.39[55] |
-0.31[56] |
9 |
UBA52 |
Ubiquitin-60S ribosomal protein L40 |
[57] |
1.72[58] |
1.67[59] |
2.47[60] |
0.54[61] |
1.33[62] |
0.62[63] |
10 |
RBX1 |
E3 ubiquitin-protein ligase RBX1 |
[64] |
-1.02[65] |
-0.54[66] |
-0.90[67] |
-1.63[68] |
-1.24[69] |
-0.83[70] |
11 |
CETN2 |
Centrin-2 |
[71] |
-1.57[72] |
-1.14[73] |
-2.55[74] |
-1.59[75] |
-2.04[76] |
-2.22[77] |
12 |
COPS6 |
COP9 signalosome complex subunit 6 |
[78] |
-0.18[79] |
-0.31[80] |
-0.56[81] |
-0.04[82] |
0.21[83] |
-0.17[84] |
13 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[85] |
-2.13[86] |
-1.80[87] |
-1.75[88] |
-2.35[89] |
-2.05[90] |
-1.81[91] |
14 |
PARP1 |
Poly [ADP-ribose] polymerase 1 |
[92] |
1.17[93] |
0.97[94] |
1.46[95] |
1.60[96] |
1.08[97] |
0.86[98] |
15 |
PCNA |
Proliferating cell nuclear antigen |
[99] |
1.93[100] |
1.96[101] |
0.31[102] |
0.85[103] |
1.11[104] |
-1.80[105] |
16 |
RAD23B |
UV excision repair protein RAD23 homolog B |
[106] |
1.65[107] |
1.55[108] |
1.61[109] |
1.64[110] |
2.11[111] |
1.30[112] |
17 |
POLD2 |
DNA polymerase delta subunit 2 |
[113] |
0.44[114] |
0.66[115] |
0.93[116] |
0.20[117] |
0.55[118] |
1.15[119] |
18 |
POLD4 |
DNA polymerase delta subunit 4 |
[120] |
-1.09[121] |
-1.39[122] |
0.45[123] |
2.51[124] |
-1.10[125] |
0.79[126] |
19 |
PRPF19 |
Pre-mRNA-processing factor 19 |
[127] |
1.32[128] |
0.91[129] |
2.19[130] |
0.53[131] |
0.87[132] |
-0.39[133] |
20 |
RAD23A |
UV excision repair protein RAD23 homolog A |
[134] |
0.63[135] |
0.60[136] |
1.42[137] |
0.13[138] |
1.05[139] |
0.83[140] |
21 |
DDB1 |
DNA damage-binding protein 1 |
[141] |
2.65[142] |
2.06[143] |
2.96[144] |
1.91[145] |
1.92[146] |
1.87[147] |
22 |
POLE3 |
DNA polymerase epsilon subunit 3 |
[148] |
0.25[149] |
0.16[150] |
0.21[151] |
0.01[152] |
1.02[153] |
-0.30[154] |
23 |
SUMO3 |
Small ubiquitin-related modifier 3 |
[155] |
0.99[156] |
0.87[157] |
0.53[158] |
0.50[159] |
0.47[160] |
0.62[161] |
24 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[162] |
1.65[163] |
1.65[164] |
1.49[165] |
0.51[166] |
1.34[167] |
1.75[168] |
25 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[169] |
-0.54[170] |
0.14[171] |
-0.13[172] |
-1.60[173] |
-0.94[174] |
-0.68[175] |
26 |
POLE4 |
DNA polymerase epsilon subunit 4 |
[176] |
-0.01[177] |
0.78[178] |
-2.92[179] |
-0.56[180] |
-1.05[181] |
-0.53[182] |
27 |
TCEA1 |
Transcription elongation factor A protein 1 |
[183] |
1.37[184] |
1.98[185] |
1.17[186] |
1.92[187] |
1.72[188] |
1.55[189] |
28 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[190] |
-0.23[191] |
0.06[192] |
-1.00[193] |
-1.53[194] |
-0.82[195] |
0.20[196] |
29 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[197] |
-0.55[198] |
0.35[199] |
0.00[200] |
0.12[201] |
0.00[202] |
0.00[203] |
30 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[204] |
-0.13[205] |
0.20[206] |
-0.54[207] |
-0.08[208] |
-0.24[209] |
-0.55[210] |
31 |
RPA2 |
Replication protein A 32 kDa subunit |
[211] |
-0.42[212] |
-0.30[213] |
0.02[214] |
0.33[215] |
0.38[216] |
-1.13[217] |
32 |
GPS1 |
COP9 signalosome complex subunit 1 |
[218] |
1.62[219] |
1.68[220] |
0.67[221] |
0.89[222] |
0.78[223] |
1.09[224] |
33 |
COPS5 |
COP9 signalosome complex subunit 5 |
[225] |
-0.24[226] |
0.65[227] |
0.62[228] |
0.91[229] |
0.44[230] |
0.79[231] |
34 |
COPS3 |
COP9 signalosome complex subunit 3 |
[232] |
0.72[233] |
0.87[234] |
1.06[235] |
1.22[236] |
1.24[237] |
0.14[238] |
35 |
UBE2N |
Ubiquitin-conjugating enzyme E2 N |
[239] |
1.73[240] |
2.25[241] |
0.83[242] |
1.39[243] |
1.25[244] |
0.55[245] |
36 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[246] |
1.86[247] |
2.02[248] |
1.27[249] |
0.83[250] |
1.04[251] |
0.82[252] |
37 |
UBE2V2 |
Ubiquitin-conjugating enzyme E2 variant 2 |
[253] |
-0.41[254] |
0.65[255] |
0.88[256] |
1.15[257] |
0.91[258] |
0.67[259] |
38 |
COPS7A |
COP9 signalosome complex subunit 7a |
[260] |
0.57[261] |
1.05[262] |
0.64[263] |
0.35[264] |
0.66[265] |
0.85[266] |
39 |
CUL4A |
Cullin-4A |
[267] |
1.27[268] |
1.60[269] |
0.66[270] |
1.00[271] |
0.78[272] |
1.85[273] |
40 |
CCNH |
Cyclin-H |
[274] |
-0.63[275] |
0.27[276] |
-0.58[277] |
-0.71[278] |
0.66[279] |
0.35[280] |
41 |
COPS2 |
COP9 signalosome complex subunit 2 |
[281] |
0.21[282] |
2.24[283] |
2.23[284] |
1.39[285] |
1.57[286] |
0.87[287] |
42 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[288] |
-0.55[289] |
-0.37[290] |
-0.70[291] |
-1.20[292] |
-1.15[293] |
0.24[294] |
43 |
RUVBL1 |
RuvB-like 1 |
[295] |
1.46[296] |
1.13[297] |
0.99[298] |
0.42[299] |
1.09[300] |
-0.20[301] |
44 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[302] |
0.92[303] |
1.22[304] |
0.39[305] |
0.62[306] |
1.04[307] |
0.57[308] |
45 |
INO80C |
INO80 complex subunit C |
[309] |
-1.22[310] |
-0.77[311] |
-1.32[312] |
-0.84[313] |
-1.58[314] |
-1.83[315] |
46 |
YY1 |
Transcriptional repressor protein YY1 |
[316] |
1.06[317] |
1.11[318] |
0.76[319] |
1.77[320] |
1.28[321] |
1.29[322] |
47 |
USP7 |
Ubiquitin carboxyl-terminal hydrolase 7 |
[323] |
2.60[324] |
2.45[325] |
1.59[326] |
1.17[327] |
1.52[328] |
1.81[329] |
48 |
ACTL6A |
Actin-like protein 6A |
[330] |
1.33[331] |
1.50[332] |
1.31[333] |
1.28[334] |
1.48[335] |
0.12[336] |
49 |
ERCC1 |
DNA excision repair protein ERCC-1 |
[337] |
0.55[338] |
0.45[339] |
0.37[340] |
0.41[341] |
0.81[342] |
0.21[343] |
50 |
INO80E |
INO80 complex subunit E |
[344] |
0.33[345] |
0.26[346] |
-0.12[347] |
-0.87[348] |
-0.41[349] |
-1.66[350] |
51 |
CDK7 |
Cyclin-dependent kinase 7 |
[351] |
0.39[352] |
1.45[353] |
0.93[354] |
0.50[355] |
0.16[356] |
-1.08[357] |
52 |
PPIE |
Peptidyl-prolyl cis-trans isomerase E |
[358] |
-0.03[359] |
-0.20[360] |
-0.15[361] |
0.99[362] |
1.19[363] |
0.39[364] |
53 |
CHD1L |
Chromodomain-helicase-DNA-binding protein 1-like |
[365] |
2.13[366] |
2.26[367] |
1.67[368] |
2.04[369] |
0.66[370] |
1.34[371] |
54 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[372] |
2.26[373] |
2.69[374] |
2.38[375] |
2.18[376] |
2.85[377] |
2.22[378] |
55 |
RFC4 |
Replication factor C subunit 4 |
[379] |
0.07[380] |
0.74[381] |
1.08[382] |
0.10[383] |
1.41[384] |
-1.48[385] |
56 |
UBE2I |
SUMO-conjugating enzyme UBC9 |
[386] |
2.33[387] |
2.05[388] |
2.19[389] |
1.40[390] |
1.93[391] |
0.72[392] |
57 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[393] |
-4.36[394] |
-3.37[395] |
-3.82[396] |
-4.11[397] |
-5.39[398] |
-3.40[399] |
58 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[400] |
1.29[401] |
1.47[402] |
0.52[403] |
0.66[404] |
0.87[405] |
0.83[406] |
59 |
MCRS1 |
Microspherule protein 1 |
[407] |
1.37[408] |
2.27[409] |
1.44[410] |
1.17[411] |
1.12[412] |
1.06[413] |
60 |
PARP2 |
Poly [ADP-ribose] polymerase 2 |
[414] |
0.96[415] |
0.64[416] |
1.16[417] |
0.79[418] |
1.54[419] |
-0.20[420] |
61 |
COPS4 |
COP9 signalosome complex subunit 4 |
[421] |
0.51[422] |
1.54[423] |
1.19[424] |
0.90[425] |
1.11[426] |
0.83[427] |
62 |
RFC1 |
Replication factor C subunit 1 |
[428] |
1.18[429] |
2.52[430] |
2.66[431] |
1.39[432] |
2.21[433] |
2.05[434] |
63 |
XAB2 |
Pre-mRNA-splicing factor SYF1 |
[435] |
1.09[436] |
1.08[437] |
1.80[438] |
0.64[439] |
1.10[440] |
0.41[441] |
64 |
RFC2 |
Replication factor C subunit 2 |
[442] |
0.77[443] |
0.68[444] |
0.48[445] |
1.25[446] |
1.68[447] |
0.50[448] |
65 |
COPS8 |
COP9 signalosome complex subunit 8 |
[449] |
1.73[450] |
1.72[451] |
0.83[452] |
2.07[453] |
3.02[454] |
1.19[455] |
66 |
RPA1 |
Replication protein A 70 kDa DNA-binding subunit |
[456] |
2.35[457] |
2.13[458] |
2.17[459] |
2.92[460] |
2.91[461] |
1.27[462] |
67 |
RPA3 |
Replication protein A 14 kDa subunit |
[463] |
0.67[464] |
1.52[465] |
2.00[466] |
0.16[467] |
0.42[468] |
0.58[469] |
68 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[470] |
1.26[471] |
1.49[472] |
1.19[473] |
1.66[474] |
1.19[475] |
1.43[476] |
69 |
TFPT |
TCF3 fusion partner |
[477] |
-1.10[478] |
-1.43[479] |
-0.85[480] |
-0.99[481] |
0.11[482] |
-2.06[483] |
70 |
ZNF830 |
Zinc finger protein 830 |
[484] |
-0.63[485] |
-0.21[486] |
0.50[487] |
-0.76[488] |
-0.45[489] |
-0.19[490] |
71 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[491] |
3.77[492] |
2.35[493] |
3.11[494] |
3.23[495] |
3.59[496] |
3.06[497] |
72 |
INO80B |
INO80 complex subunit B |
[498] |
-4.41[499] |
-3.92[500] |
-4.53[501] |
-4.67[502] |
-4.78[503] |
-4.52[504] |
73 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[505] |
0.79[506] |
1.31[507] |
1.16[508] |
1.39[509] |
0.59[510] |
-0.39[511] |
74 |
XPA |
DNA repair protein complementing XP-A cells |
[512] |
-1.30[513] |
-0.37[514] |
-0.94[515] |
-0.85[516] |
-0.71[517] |
0.59[518] |
75 |
CUL4B |
Cullin-4B |
[519] |
0.94[520] |
2.38[521] |
3.61[522] |
3.38[523] |
4.29[524] |
2.15[525] |
76 |
DDB2 |
DNA damage-binding protein 2 |
[526] |
2.12[527] |
1.69[528] |
0.14[529] |
-0.54[530] |
0.02[531] |
-0.25[532] |
77 |
RFC5 |
Replication factor C subunit 5 |
[533] |
1.17[534] |
1.68[535] |
1.63[536] |
1.34[537] |
1.84[538] |
0.39[539] |
78 |
ERCC5 |
DNA repair protein complementing XP-G cells |
[540] |
-3.74[541] |
-2.90[542] |
-3.15[543] |
-2.67[544] |
-2.89[545] |
-0.96[546] |
79 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[547] |
0.42[548] |
1.77[549] |
0.71[550] |
1.45[551] |
0.97[552] |
0.32[553] |
80 |
COPS7B |
COP9 signalosome complex subunit 7b |
[554] |
1.99[555] |
2.43[556] |
2.11[557] |
1.68[558] |
1.70[559] |
0.63[560] |
81 |
XPC |
DNA repair protein complementing XP-C cells |
[561] |
1.95[562] |
1.76[563] |
2.40[564] |
1.51[565] |
1.74[566] |
2.51[567] |
82 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[568] |
2.24[569] |
2.71[570] |
2.43[571] |
2.43[572] |
2.18[573] |
1.40[574] |
83 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[575] |
2.16[576] |
2.26[577] |
2.45[578] |
2.39[579] |
2.28[580] |
0.44[581] |
84 |
XRCC1 |
DNA repair protein XRCC1 |
[582] |
1.67[583] |
1.91[584] |
2.74[585] |
1.84[586] |
1.79[587] |
0.35[588] |
85 |
RFC3 |
Replication factor C subunit 3 |
[589] |
2.21[590] |
3.12[591] |
3.02[592] |
2.32[593] |
2.89[594] |
0.40[595] |
86 |
ISY1 |
Pre-mRNA-splicing factor ISY1 homolog |
[596] |
0.47[597] |
0.66[598] |
0.23[599] |
0.74[600] |
0.93[601] |
0.60[602] |
87 |
LIG3 |
DNA ligase 3 |
[603] |
2.22[604] |
2.31[605] |
3.14[606] |
2.15[607] |
1.17[608] |
2.14[609] |
88 |
LIG1 |
DNA ligase 1 |
[610] |
2.67[611] |
2.74[612] |
3.13[613] |
1.58[614] |
2.29[615] |
0.90[616] |
89 |
PIAS1 |
E3 SUMO-protein ligase PIAS1 |
[617] |
1.08[618] |
1.39[619] |
2.05[620] |
1.95[621] |
1.64[622] |
2.45[623] |
90 |
AQR |
Intron-binding protein aquarius |
[624] |
2.40[625] |
2.72[626] |
2.61[627] |
3.25[628] |
3.27[629] |
3.16[630] |
91 |
ACTR8 |
Actin-related protein 8 |
[631] |
1.98[632] |
2.21[633] |
0.88[634] |
1.42[635] |
2.24[636] |
2.26[637] |
92 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[638] |
2.63[639] |
3.08[640] |
2.67[641] |
2.34[642] |
2.48[643] |
2.30[644] |
93 |
INO80 |
DNA helicase INO80 |
[645] |
2.36[646] |
2.71[647] |
2.44[648] |
2.84[649] |
2.56[650] |
3.12[651] |
94 |
EP300 |
Histone acetyltransferase p300 |
[652] |
3.76[653] |
3.40[654] |
4.05[655] |
3.64[656] |
3.67[657] |
4.03[658] |
95 |
POLD1 |
DNA polymerase delta catalytic subunit |
[659] |
2.89[660] |
3.17[661] |
3.75[662] |
2.89[663] |
3.63[664] |
1.94[665] |
96 |
ELL |
RNA polymerase II elongation factor ELL |
[666] |
1.92[667] |
2.13[668] |
2.11[669] |
1.23[670] |
2.03[671] |
1.75[672] |
97 |
POLK |
DNA polymerase kappa |
[673] |
0.19[674] |
1.72[675] |
1.73[676] |
2.90[677] |
2.60[678] |
3.37[679] |
98 |
ACTR5 |
Actin-related protein 5 |
[680] |
2.23[681] |
1.90[682] |
1.14[683] |
1.42[684] |
0.58[685] |
1.49[686] |
99 |
ERCC8 |
DNA excision repair protein ERCC-8 |
[687] |
1.82[688] |
2.99[689] |
1.89[690] |
0.65[691] |
1.94[692] |
1.32[693] |
100 |
RNF111 |
E3 ubiquitin-protein ligase Arkadia |
[694] |
2.65[695] |
2.51[696] |
2.83[697] |
3.50[698] |
3.15[699] |
3.56[700] |
101 |
NFRKB |
Nuclear factor related to kappa-B-binding protein |
[701] |
3.91[702] |
3.82[703] |
3.53[704] |
3.54[705] |
3.11[706] |
3.57[707] |
102 |
POLD3 |
DNA polymerase delta subunit 3 |
[708] |
2.21[709] |
2.13[710] |
2.86[711] |
3.18[712] |
3.64[713] |
2.26[714] |
103 |
POLE |
DNA polymerase epsilon catalytic subunit A |
[715] |
4.08[716] |
4.75[717] |
4.56[718] |
3.81[719] |
4.79[720] |
4.21[721] |
104 |
PIAS3 |
E3 SUMO-protein ligase PIAS3 |
[722] |
2.34[723] |
1.58[724] |
2.63[725] |
3.79[726] |
3.46[727] |
2.04[728] |
105 |
POLE2 |
DNA polymerase epsilon subunit 2 |
[729] |
1.74[730] |
2.59[731] |
3.34[732] |
2.22[733] |
2.74[734] |
0.11[735] |
106 |
ERCC4 |
DNA repair endonuclease XPF |
[736] |
3.25[737] |
2.98[738] |
2.91[739] |
3.30[740] |
3.42[741] |
3.68[742] |
107 |
ERCC6 |
DNA excision repair protein ERCC-6 |
[743] |
2.33[744] |
3.15[745] |
1.06[746] |
4.38[747] |
3.44[748] |
4.50[749] |
108 |
USP45 |
Ubiquitin carboxyl-terminal hydrolase 45 |
[750] |
2.46[751] |
4.09[752] |
3.29[753] |
3.82[754] |
3.84[755] |
4.29[756] |
109 |
INO80D |
INO80 complex subunit D |
[757] |
3.19[758] |
5.08[759] |
5.30[760] |
3.63[761] |
3.85[762] |
6.03[763] |
110 |
UVSSA |
UV-stimulated scaffold protein A |
[764] |
[765] |
[766] |
[767] |
[768] |
[769] |
[770] |
|
|
|
|
|
|
|
|
|
|