REACTOME_NEGATIVE_EPIGENETIC_REGULATION_OF_RRNA_EXPRESSION |
Return to index |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[1] |
-2.55[2] |
-2.84[3] |
-3.11[4] |
-2.20[5] |
-2.37[6] |
-0.96[7] |
2 |
POLR1D |
DNA-directed RNA polymerases I and III subunit RPAC2 |
[8] |
-0.54[9] |
-0.15[10] |
-0.49[11] |
-1.79[12] |
-2.00[13] |
-2.20[14] |
3 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[15] |
0.54[16] |
0.21[17] |
0.26[18] |
-0.57[19] |
0.18[20] |
0.86[21] |
4 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[22] |
-1.65[23] |
-1.30[24] |
-1.37[25] |
-2.68[26] |
-2.10[27] |
-1.57[28] |
5 |
SAP18 |
Histone deacetylase complex subunit SAP18 |
[29] |
-0.12[30] |
-0.20[31] |
-0.48[32] |
-0.16[33] |
-0.43[34] |
0.25[35] |
6 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[36] |
-1.34[37] |
-1.38[38] |
-2.24[39] |
-2.61[40] |
-1.98[41] |
-0.69[42] |
7 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[43] |
-1.66[44] |
-1.09[45] |
-1.24[46] |
-0.96[47] |
-1.16[48] |
-0.89[49] |
8 |
HDAC1 |
Histone deacetylase 1 |
[50] |
0.43[51] |
0.17[52] |
0.81[53] |
0.64[54] |
0.31[55] |
-0.08[56] |
9 |
TAF1D |
TATA box-binding protein-associated
factor RNA polymerase I subunit D |
-1.82[57] |
-0.32[58] |
-0.78[59] |
-1.61[60] |
-1.99[61] |
-1.81[62] |
10 |
CCNH |
Cyclin-H |
[63] |
-1.74[64] |
-1.17[65] |
-1.82[66] |
-1.78[67] |
-0.50[68] |
-0.54[69] |
11 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[70] |
-0.18[71] |
-0.22[72] |
-0.85[73] |
-0.45[74] |
-0.11[75] |
-0.32[76] |
12 |
CDK7 |
Cyclin-dependent kinase 7 |
[77] |
-0.72[78] |
0.02[79] |
-0.31[80] |
-0.57[81] |
-1.00[82] |
-1.97[83] |
13 |
SAP30BP |
SAP30-binding protein |
[84] |
0.30[85] |
-0.31[86] |
-0.43[87] |
-0.24[88] |
-0.27[89] |
-0.25[90] |
14 |
POLR1C |
DNA-directed RNA polymerases I and III subunit RPAC1 |
[91] |
-0.17[92] |
-0.48[93] |
-1.65[94] |
-1.13[95] |
-1.01[96] |
-0.66[97] |
15 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[98] |
-5.47[99] |
-4.81[100] |
-5.06[101] |
-5.19[102] |
-6.55[103] |
-4.29[104] |
16 |
UBTF |
Nucleolar transcription factor 1 |
[105] |
1.14[106] |
0.50[107] |
0.69[108] |
1.12[109] |
0.70[110] |
0.80[111] |
17 |
POLR1E |
DNA-directed RNA polymerase I subunit RPA49 |
[112] |
-0.78[113] |
-1.06[114] |
0.79[115] |
-1.58[116] |
-0.44[117] |
-0.31[118] |
18 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[119] |
0.16[120] |
0.05[121] |
-0.05[122] |
0.59[123] |
0.03[124] |
0.54[125] |
19 |
MBD2 |
Methyl-CpG-binding domain protein 2 |
[126] |
-0.45[127] |
-0.69[128] |
-0.89[129] |
0.34[130] |
0.60[131] |
0.07[132] |
20 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[133] |
-0.32[134] |
-0.13[135] |
-0.08[136] |
0.31[137] |
-0.57[138] |
-1.28[139] |
21 |
RRP8 |
Ribosomal RNA-processing protein 8 |
[140] |
-0.86[141] |
-1.01[142] |
-1.15[143] |
-0.86[144] |
-1.86[145] |
-0.37[146] |
22 |
HDAC2 |
Histone deacetylase 2 |
[147] |
1.65[148] |
2.69[149] |
2.03[150] |
2.16[151] |
2.18[152] |
0.58[153] |
23 |
SMARCA5 |
SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A
member 5 |
1.25[154] |
1.54[155] |
1.80[156] |
1.84[157] |
2.30[158] |
1.92[159] |
24 |
TBP |
TATA-box-binding protein |
[160] |
-0.30[161] |
-0.28[162] |
-1.51[163] |
-1.09[164] |
-0.40[165] |
-0.69[166] |
25 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[167] |
-0.69[168] |
0.33[169] |
-0.53[170] |
0.38[171] |
-0.19[172] |
-0.57[173] |
26 |
SUDS3 |
Sin3 histone deacetylase corepressor complex component SDS3 |
[174] |
0.88[175] |
1.26[176] |
1.05[177] |
1.11[178] |
0.49[179] |
1.49[180] |
27 |
BAZ2A |
Bromodomain adjacent to zinc finger domain protein 2A |
[181] |
2.56[182] |
2.14[183] |
2.67[184] |
2.53[185] |
2.37[186] |
1.91[187] |
28 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[188] |
1.13[189] |
1.28[190] |
1.19[191] |
1.35[192] |
1.02[193] |
0.51[194] |
29 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[195] |
1.05[196] |
0.82[197] |
1.21[198] |
1.31[199] |
1.12[200] |
-0.45[201] |
30 |
SIN3A |
Paired amphipathic helix protein Sin3a |
[202] |
1.31[203] |
1.11[204] |
2.27[205] |
1.99[206] |
1.62[207] |
1.66[208] |
31 |
SAP30 |
Histone deacetylase complex subunit SAP30 |
[209] |
-0.60[210] |
-0.29[211] |
0.27[212] |
-0.98[213] |
0.56[214] |
-2.07[215] |
32 |
ARID4B |
AT-rich interactive domain-containing protein 4B |
[216] |
-0.51[217] |
1.00[218] |
1.09[219] |
1.81[220] |
0.82[221] |
2.37[222] |
33 |
DNMT1 |
DNA (cytosine-5)-methyltransferase 1 |
[223] |
2.89[224] |
2.13[225] |
2.97[226] |
3.10[227] |
3.64[228] |
1.46[229] |
34 |
TAF1C |
TATA box-binding protein-associated
factor RNA polymerase I subunit C |
0.34[230] |
1.09[231] |
0.67[232] |
0.86[233] |
1.09[234] |
1.14[235] |
35 |
POLR1B |
DNA-directed RNA polymerase I subunit RPA2 |
[236] |
2.26[237] |
1.94[238] |
1.37[239] |
1.23[240] |
1.71[241] |
2.51[242] |
36 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[243] |
1.52[244] |
1.64[245] |
1.43[246] |
1.27[247] |
1.33[248] |
1.41[249] |
37 |
SAP130 |
Histone deacetylase complex subunit SAP130 |
[250] |
1.67[251] |
1.05[252] |
1.49[253] |
1.69[254] |
1.55[255] |
0.78[256] |
38 |
DNMT3B |
DNA (cytosine-5)-methyltransferase 3B |
[257] |
1.64[258] |
0.54[259] |
0.08[260] |
0.52[261] |
-1.00[262] |
-1.59[263] |
39 |
TAF1B |
TATA box-binding protein-associated
factor RNA polymerase I subunit B |
0.35[264] |
0.97[265] |
0.47[266] |
1.79[267] |
0.08[268] |
0.28[269] |
40 |
TTF1 |
Transcription termination factor 1 |
[270] |
-0.33[271] |
-0.13[272] |
0.42[273] |
0.87[274] |
1.04[275] |
0.07[276] |
41 |
SUV39H1 |
Histone-lysine N-methyltransferase SUV39H1 |
[277] |
0.24[278] |
-0.16[279] |
1.33[280] |
0.76[281] |
0.62[282] |
0.50[283] |
42 |
POLR1A |
DNA-directed RNA polymerase I subunit RPA1 |
[284] |
3.43[285] |
2.20[286] |
1.99[287] |
2.61[288] |
2.52[289] |
2.63[290] |
43 |
SIN3B |
Paired amphipathic helix protein Sin3b |
[291] |
1.81[292] |
1.60[293] |
1.85[294] |
1.97[295] |
2.38[296] |
1.82[297] |
44 |
SAP30L |
Histone deacetylase complex subunit SAP30L |
[298] |
1.17[299] |
1.38[300] |
1.55[301] |
1.15[302] |
1.79[303] |
2.11[304] |
45 |
SIRT1 |
NAD-dependent protein deacetylase sirtuin-1 |
[305] |
0.43[306] |
1.25[307] |
0.76[308] |
1.56[309] |
1.69[310] |
1.72[311] |
46 |
TAF1A |
TATA box-binding protein-associated
factor RNA polymerase I subunit A |
-1.07[312] |
-0.72[313] |
-0.24[314] |
0.84[315] |
-0.70[316] |
-0.53[317] |
47 |
H3C3 |
|
[318] |
[319] |
[320] |
[321] |
[322] |
[323] |
[324] |
48 |
H4C5 |
|
[325] |
[326] |
[327] |
[328] |
[329] |
[330] |
[331] |
49 |
H2BC1 |
|
[332] |
[333] |
[334] |
[335] |
[336] |
[337] |
[338] |
50 |
H4C8 |
|
[339] |
[340] |
[341] |
[342] |
[343] |
[344] |
[345] |
51 |
H4C4 |
|
[346] |
[347] |
[348] |
[349] |
[350] |
[351] |
[352] |
52 |
H4C11 |
|
[353] |
[354] |
[355] |
[356] |
[357] |
[358] |
[359] |
53 |
H2AB1 |
|
[360] |
[361] |
[362] |
[363] |
[364] |
[365] |
[366] |
54 |
H2BC15 |
|
[367] |
[368] |
[369] |
[370] |
[371] |
[372] |
[373] |
55 |
H3C12 |
|
[374] |
[375] |
[376] |
[377] |
[378] |
[379] |
[380] |
56 |
POLR1F |
|
[381] |
[382] |
[383] |
[384] |
[385] |
[386] |
[387] |
57 |
H3C10 |
|
[388] |
[389] |
[390] |
[391] |
[392] |
[393] |
[394] |
58 |
H2AC6 |
|
[395] |
[396] |
[397] |
[398] |
[399] |
[400] |
[401] |
59 |
H2BU1 |
|
[402] |
[403] |
[404] |
[405] |
[406] |
[407] |
[408] |
60 |
H3C13 |
|
[409] |
[410] |
[411] |
[412] |
[413] |
[414] |
[415] |
61 |
H2BC10 |
|
[416] |
[417] |
[418] |
[419] |
[420] |
[421] |
[422] |
62 |
H2BC6 |
|
[423] |
[424] |
[425] |
[426] |
[427] |
[428] |
[429] |
63 |
H2AZ1 |
|
[430] |
[431] |
[432] |
[433] |
[434] |
[435] |
[436] |
64 |
H4C3 |
|
[437] |
[438] |
[439] |
[440] |
[441] |
[442] |
[443] |
65 |
H3C8 |
|
[444] |
[445] |
[446] |
[447] |
[448] |
[449] |
[450] |
66 |
H3C4 |
|
[451] |
[452] |
[453] |
[454] |
[455] |
[456] |
[457] |
67 |
H3C11 |
|
[458] |
[459] |
[460] |
[461] |
[462] |
[463] |
[464] |
68 |
H2BS1 |
|
[465] |
[466] |
[467] |
[468] |
[469] |
[470] |
[471] |
69 |
H4C9 |
|
[472] |
[473] |
[474] |
[475] |
[476] |
[477] |
[478] |
70 |
H4C12 |
|
[479] |
[480] |
[481] |
[482] |
[483] |
[484] |
[485] |
71 |
H2BC7 |
|
[486] |
[487] |
[488] |
[489] |
[490] |
[491] |
[492] |
72 |
H2BC9 |
|
[493] |
[494] |
[495] |
[496] |
[497] |
[498] |
[499] |
73 |
H4-16 |
|
[500] |
[501] |
[502] |
[503] |
[504] |
[505] |
[506] |
74 |
H2AC20 |
|
[507] |
[508] |
[509] |
[510] |
[511] |
[512] |
[513] |
75 |
H4C13 |
|
[514] |
[515] |
[516] |
[517] |
[518] |
[519] |
[520] |
76 |
H3-3B |
|
[521] |
[522] |
[523] |
[524] |
[525] |
[526] |
[527] |
77 |
H2BC3 |
|
[528] |
[529] |
[530] |
[531] |
[532] |
[533] |
[534] |
78 |
H2AC7 |
|
[535] |
[536] |
[537] |
[538] |
[539] |
[540] |
[541] |
79 |
H2AZ2 |
|
[542] |
[543] |
[544] |
[545] |
[546] |
[547] |
[548] |
80 |
H2BC14 |
|
[549] |
[550] |
[551] |
[552] |
[553] |
[554] |
[555] |
81 |
H2BC8 |
|
[556] |
[557] |
[558] |
[559] |
[560] |
[561] |
[562] |
82 |
H4C15 |
|
[563] |
[564] |
[565] |
[566] |
[567] |
[568] |
[569] |
83 |
H4C1 |
|
[570] |
[571] |
[572] |
[573] |
[574] |
[575] |
[576] |
84 |
H2AC8 |
|
[577] |
[578] |
[579] |
[580] |
[581] |
[582] |
[583] |
85 |
H2BC5 |
|
[584] |
[585] |
[586] |
[587] |
[588] |
[589] |
[590] |
86 |
H2AC14 |
|
[591] |
[592] |
[593] |
[594] |
[595] |
[596] |
[597] |
87 |
POLR1G |
|
[598] |
[599] |
[600] |
[601] |
[602] |
[603] |
[604] |
88 |
H3C6 |
|
[605] |
[606] |
[607] |
[608] |
[609] |
[610] |
[611] |
89 |
H3C14 |
|
[612] |
[613] |
[614] |
[615] |
[616] |
[617] |
[618] |
90 |
H2BC11 |
|
[619] |
[620] |
[621] |
[622] |
[623] |
[624] |
[625] |
91 |
H4C2 |
|
[626] |
[627] |
[628] |
[629] |
[630] |
[631] |
[632] |
92 |
H2BC13 |
|
[633] |
[634] |
[635] |
[636] |
[637] |
[638] |
[639] |
93 |
H2BC12 |
|
[640] |
[641] |
[642] |
[643] |
[644] |
[645] |
[646] |
94 |
H3-3A |
|
[647] |
[648] |
[649] |
[650] |
[651] |
[652] |
[653] |
95 |
POLR1H |
|
[654] |
[655] |
[656] |
[657] |
[658] |
[659] |
[660] |
96 |
H3C1 |
|
[661] |
[662] |
[663] |
[664] |
[665] |
[666] |
[667] |
97 |
H3C15 |
|
[668] |
[669] |
[670] |
[671] |
[672] |
[673] |
[674] |
98 |
H2AX |
|
[675] |
[676] |
[677] |
[678] |
[679] |
[680] |
[681] |
99 |
H3C7 |
|
[682] |
[683] |
[684] |
[685] |
[686] |
[687] |
[688] |
100 |
H2AC4 |
|
[689] |
[690] |
[691] |
[692] |
[693] |
[694] |
[695] |
101 |
H2BC17 |
|
[696] |
[697] |
[698] |
[699] |
[700] |
[701] |
[702] |
102 |
H2AJ |
|
[703] |
[704] |
[705] |
[706] |
[707] |
[708] |
[709] |
103 |
H2BC21 |
|
[710] |
[711] |
[712] |
[713] |
[714] |
[715] |
[716] |
104 |
H4C6 |
|
[717] |
[718] |
[719] |
[720] |
[721] |
[722] |
[723] |
105 |
H4C14 |
|
[724] |
[725] |
[726] |
[727] |
[728] |
[729] |
[730] |
106 |
H2BC4 |
|
[731] |
[732] |
[733] |
[734] |
[735] |
[736] |
[737] |
107 |
H3C2 |
|
[738] |
[739] |
[740] |
[741] |
[742] |
[743] |
[744] |
|
|
|
|
|
|
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|
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