REACTOME_HIV_ELONGATION_ARREST_AND_RECOVERY |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[1] |
-2.68[2] |
-2.64[3] |
-2.96[4] |
-2.08[5] |
-2.30[6] |
-0.86[7] |
2 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[8] |
-3.38[9] |
-3.04[10] |
-2.84[11] |
-3.31[12] |
-3.14[13] |
-2.61[14] |
3 |
SSRP1 |
FACT complex subunit SSRP1 |
[15] |
0.44[16] |
0.07[17] |
0.28[18] |
0.30[19] |
0.64[20] |
-1.07[21] |
4 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[22] |
0.40[23] |
0.41[24] |
0.41[25] |
-0.45[26] |
0.26[27] |
0.95[28] |
5 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[29] |
-1.78[30] |
-1.10[31] |
-1.21[32] |
-2.56[33] |
-2.02[34] |
-1.48[35] |
6 |
TCEA1 |
Transcription elongation factor A protein 1 |
[36] |
0.12[37] |
0.74[38] |
0.09[39] |
0.97[40] |
0.64[41] |
0.75[42] |
7 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[43] |
-1.47[44] |
-1.18[45] |
-2.08[46] |
-2.49[47] |
-1.90[48] |
-0.59[49] |
8 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[50] |
-1.80[51] |
-0.89[52] |
-1.08[53] |
-0.84[54] |
-1.09[55] |
-0.80[56] |
9 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[57] |
-1.37[58] |
-1.03[59] |
-1.62[60] |
-1.04[61] |
-1.32[62] |
-1.35[63] |
10 |
SUPT5H |
Transcription elongation factor SPT5 |
[64] |
0.08[65] |
-0.17[66] |
0.71[67] |
0.56[68] |
0.23[69] |
0.13[70] |
11 |
GTF2F2 |
General transcription factor IIF subunit 2 |
[71] |
-2.15[72] |
-1.47[73] |
-1.23[74] |
-2.01[75] |
-1.93[76] |
-2.11[77] |
12 |
SUPT4H1 |
Transcription elongation factor SPT4 |
[78] |
-0.45[79] |
-0.31[80] |
-0.81[81] |
-1.53[82] |
-1.09[83] |
-1.35[84] |
13 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[85] |
0.61[86] |
0.78[87] |
0.19[88] |
-0.12[89] |
-0.05[90] |
0.02[91] |
14 |
SUPT16H |
FACT complex subunit SPT16 |
[92] |
1.40[93] |
0.75[94] |
1.42[95] |
1.60[96] |
1.64[97] |
0.42[98] |
15 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[99] |
-1.79[100] |
-1.61[101] |
-1.78[102] |
-2.16[103] |
-2.23[104] |
-0.56[105] |
16 |
GTF2F1 |
General transcription factor IIF subunit 1 |
[106] |
0.18[107] |
-0.17[108] |
1.21[109] |
-0.28[110] |
0.08[111] |
-0.79[112] |
17 |
CDK9 |
Cyclin-dependent kinase 9 |
[113] |
-0.58[114] |
-0.90[115] |
-0.90[116] |
-0.04[117] |
-0.49[118] |
0.63[119] |
18 |
CCNK |
Cyclin-K |
[120] |
-0.05[121] |
-0.96[122] |
-0.86[123] |
0.52[124] |
-0.15[125] |
-1.58[126] |
19 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[127] |
1.01[128] |
1.45[129] |
1.30[130] |
1.22[131] |
1.77[132] |
1.43[133] |
20 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[134] |
0.05[135] |
0.23[136] |
-0.56[137] |
-0.29[138] |
-0.22[139] |
0.04[140] |
21 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[141] |
2.52[142] |
1.12[143] |
2.03[144] |
2.27[145] |
2.51[146] |
2.27[147] |
22 |
CTDP1 |
RNA polymerase II subunit A C-terminal domain phosphatase |
[148] |
1.13[149] |
0.43[150] |
0.34[151] |
0.55[152] |
0.61[153] |
0.79[154] |
23 |
CCNT1 |
Cyclin-T1 |
[155] |
0.82[156] |
1.83[157] |
1.70[158] |
2.03[159] |
1.84[160] |
2.10[161] |
24 |
ELL |
RNA polymerase II elongation factor ELL |
[162] |
0.68[163] |
0.90[164] |
1.03[165] |
0.28[166] |
0.95[167] |
0.96[168] |
25 |
CCNT2 |
Cyclin-T2 |
[169] |
1.06[170] |
2.95[171] |
2.35[172] |
2.57[173] |
2.01[174] |
3.37[175] |
26 |
ENSG00000288616 |
[176] |
[177] |
[178] |
[179] |
[180] |
[181] |
[182] |
27 |
ELOA2 |
Elongin-A2 |
[183] |
[184] |
[185] |
[186] |
[187] |
[188] |
[189] |
28 |
NELFB |
Negative elongation factor B |
[190] |
[191] |
[192] |
[193] |
[194] |
[195] |
[196] |
29 |
ELOC |
Elongin-C |
[197] |
[198] |
[199] |
[200] |
[201] |
[202] |
[203] |
30 |
ENSG00000288607 |
[204] |
[205] |
[206] |
[207] |
[208] |
[209] |
[210] |
31 |
ELOB |
Elongin-B |
[211] |
[212] |
[213] |
[214] |
[215] |
[216] |
[217] |
32 |
ELOA |
Elongin-A |
[218] |
[219] |
[220] |
[221] |
[222] |
[223] |
[224] |
33 |
ENSG00000288631 |
[225] |
[226] |
[227] |
[228] |
[229] |
[230] |
[231] |
34 |
NELFCD |
Negative elongation factor C/D |
[232] |
[233] |
[234] |
[235] |
[236] |
[237] |
[238] |
35 |
NELFE |
Negative elongation factor E |
[239] |
[240] |
[241] |
[242] |
[243] |
[244] |
[245] |
36 |
NELFA |
Negative elongation factor A |
[246] |
[247] |
[248] |
[249] |
[250] |
[251] |
[252] |
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