REACTOME_GLOBAL_GENOME_NUCLEOTIDE_EXCISION_REPAIR_GG_NER | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | ACTB | Actin, cytoplasmic 1 | [1] | -0.28[2] | -0.91[3] | -0.55[4] | 0.08[5] | -0.29[6] | 0.12[7] |
2 | UBB | Polyubiquitin-B | [8] | -1.09[9] | -1.24[10] | -1.35[11] | -1.70[12] | -1.23[13] | -0.58[14] |
3 | RPS27A | Ubiquitin-40S ribosomal protein S27a | [15] | [16] | [17] | [18] | [19] | [20] | [21] |
4 | UBC | Polyubiquitin-C | [22] | -0.65[23] | -0.48[24] | -0.99[25] | -0.85[26] | -0.85[27] | -0.13[28] |
5 | SUMO1 | Small ubiquitin-related modifier 1 | [29] | -0.49[30] | -0.28[31] | -0.91[32] | -0.39[33] | -0.43[34] | -0.24[35] |
6 | SUMO2 | Small ubiquitin-related modifier 2 | [36] | 1.14[37] | 1.40[38] | 1.17[39] | 0.44[40] | 0.44[41] | -0.28[42] |
7 | UBA52 | Ubiquitin-60S ribosomal protein L40 | [43] | 1.79[44] | 1.75[45] | 2.52[46] | 0.55[47] | 1.38[48] | 0.64[49] |
8 | RBX1 | E3 ubiquitin-protein ligase RBX1 | [50] | -0.95[51] | -0.46[52] | -0.85[53] | -1.63[54] | -1.19[55] | -0.80[56] |
9 | CETN2 | Centrin-2 | [57] | -1.50[58] | -1.06[59] | -2.50[60] | -1.58[61] | -1.99[62] | -2.19[63] |
10 | COPS6 | COP9 signalosome complex subunit 6 | [64] | -0.11[65] | -0.23[66] | -0.51[67] | -0.03[68] | 0.26[69] | -0.15[70] |
11 | PARP1 | Poly [ADP-ribose] polymerase 1 | [71] | 1.23[72] | 1.05[73] | 1.51[74] | 1.61[75] | 1.13[76] | 0.89[77] |
12 | PCNA | Proliferating cell nuclear antigen | [78] | 1.99[79] | 2.04[80] | 0.36[81] | 0.86[82] | 1.16[83] | -1.77[84] |
13 | RAD23B | UV excision repair protein RAD23 homolog B | [85] | 1.72[86] | 1.63[87] | 1.66[88] | 1.65[89] | 2.16[90] | 1.33[91] |
14 | POLD2 | DNA polymerase delta subunit 2 | [92] | 0.51[93] | 0.74[94] | 0.98[95] | 0.21[96] | 0.60[97] | 1.18[98] |
15 | POLD4 | DNA polymerase delta subunit 4 | [99] | -1.02[100] | -1.31[101] | 0.50[102] | 2.52[103] | -1.05[104] | 0.82[105] |
16 | RAD23A | UV excision repair protein RAD23 homolog A | [106] | 0.70[107] | 0.68[108] | 1.47[109] | 0.14[110] | 1.10[111] | 0.86[112] |
17 | DDB1 | DNA damage-binding protein 1 | [113] | 2.72[114] | 2.14[115] | 3.01[116] | 1.92[117] | 1.96[118] | 1.90[119] |
18 | POLE3 | DNA polymerase epsilon subunit 3 | [120] | 0.32[121] | 0.24[122] | 0.26[123] | 0.02[124] | 1.07[125] | -0.27[126] |
19 | SUMO3 | Small ubiquitin-related modifier 3 | [127] | 1.06[128] | 0.95[129] | 0.58[130] | 0.51[131] | 0.52[132] | 0.65[133] |
20 | POLE4 | DNA polymerase epsilon subunit 4 | [134] | 0.06[135] | 0.85[136] | -2.87[137] | -0.55[138] | -1.00[139] | -0.51[140] |
21 | RPA2 | Replication protein A 32 kDa subunit | [141] | -0.35[142] | -0.22[143] | 0.07[144] | 0.33[145] | 0.42[146] | -1.10[147] |
22 | GPS1 | COP9 signalosome complex subunit 1 | [148] | 1.69[149] | 1.76[150] | 0.72[151] | 0.89[152] | 0.82[153] | 1.12[154] |
23 | COPS5 | COP9 signalosome complex subunit 5 | [155] | -0.17[156] | 0.73[157] | 0.67[158] | 0.92[159] | 0.49[160] | 0.81[161] |
24 | COPS3 | COP9 signalosome complex subunit 3 | [162] | 0.79[163] | 0.95[164] | 1.11[165] | 1.23[166] | 1.28[167] | 0.16[168] |
25 | UBE2N | Ubiquitin-conjugating enzyme E2 N | [169] | 1.79[170] | 2.33[171] | 0.88[172] | 1.40[173] | 1.30[174] | 0.58[175] |
26 | UBE2V2 | Ubiquitin-conjugating enzyme E2 variant 2 | [176] | -0.34[177] | 0.72[178] | 0.93[179] | 1.15[180] | 0.96[181] | 0.69[182] |
27 | COPS7A | COP9 signalosome complex subunit 7a | [183] | 0.64[184] | 1.13[185] | 0.69[186] | 0.36[187] | 0.71[188] | 0.88[189] |
28 | CUL4A | Cullin-4A | [190] | 1.34[191] | 1.68[192] | 0.71[193] | 1.01[194] | 0.83[195] | 1.88[196] |
29 | CCNH | Cyclin-H | [197] | -0.56[198] | 0.35[199] | -0.53[200] | -0.70[201] | 0.71[202] | 0.37[203] |
30 | COPS2 | COP9 signalosome complex subunit 2 | [204] | 0.28[205] | 2.32[206] | 2.28[207] | 1.40[208] | 1.62[209] | 0.90[210] |
31 | RUVBL1 | RuvB-like 1 | [211] | 1.53[212] | 1.21[213] | 1.04[214] | 0.43[215] | 1.13[216] | -0.17[217] |
32 | ERCC3 | TFIIH basal transcription factor complex helicase XPB subunit | [218] | 0.99[219] | 1.30[220] | 0.44[221] | 0.63[222] | 1.09[223] | 0.60[224] |
33 | INO80C | INO80 complex subunit C | [225] | -1.15[226] | -0.70[227] | -1.28[228] | -0.83[229] | -1.53[230] | -1.81[231] |
34 | YY1 | Transcriptional repressor protein YY1 | [232] | 1.13[233] | 1.19[234] | 0.81[235] | 1.78[236] | 1.33[237] | 1.32[238] |
35 | ACTL6A | Actin-like protein 6A | [239] | 1.40[240] | 1.57[241] | 1.36[242] | 1.29[243] | 1.53[244] | 0.15[245] |
36 | ERCC1 | DNA excision repair protein ERCC-1 | [246] | 0.62[247] | 0.53[248] | 0.42[249] | 0.42[250] | 0.86[251] | 0.24[252] |
37 | INO80E | INO80 complex subunit E | [253] | 0.40[254] | 0.34[255] | -0.07[256] | -0.86[257] | -0.36[258] | -1.63[259] |
38 | CDK7 | Cyclin-dependent kinase 7 | [260] | 0.46[261] | 1.53[262] | 0.98[263] | 0.51[264] | 0.21[265] | -1.05[266] |
39 | CHD1L | Chromodomain-helicase-DNA-binding protein 1-like | [267] | 2.20[268] | 2.34[269] | 1.72[270] | 2.05[271] | 0.71[272] | 1.37[273] |
40 | RFC4 | Replication factor C subunit 4 | [274] | 0.14[275] | 0.82[276] | 1.13[277] | 0.11[278] | 1.46[279] | -1.45[280] |
41 | UBE2I | SUMO-conjugating enzyme UBC9 | [281] | 2.40[282] | 2.13[283] | 2.24[284] | 1.40[285] | 1.98[286] | 0.75[287] |
42 | GTF2H2 | General transcription factor IIH subunit 2 | [288] | -4.30[289] | -3.29[290] | -3.77[291] | -4.11[292] | -5.34[293] | -3.37[294] |
43 | MCRS1 | Microspherule protein 1 | [295] | 1.43[296] | 2.35[297] | 1.49[298] | 1.18[299] | 1.17[300] | 1.08[301] |
44 | PARP2 | Poly [ADP-ribose] polymerase 2 | [302] | 1.03[303] | 0.72[304] | 1.21[305] | 0.80[306] | 1.59[307] | -0.17[308] |
45 | COPS4 | COP9 signalosome complex subunit 4 | [309] | 0.58[310] | 1.62[311] | 1.24[312] | 0.91[313] | 1.15[314] | 0.86[315] |
46 | RFC1 | Replication factor C subunit 1 | [316] | 1.25[317] | 2.59[318] | 2.71[319] | 1.40[320] | 2.26[321] | 2.08[322] |
47 | RFC2 | Replication factor C subunit 2 | [323] | 0.84[324] | 0.76[325] | 0.53[326] | 1.26[327] | 1.73[328] | 0.53[329] |
48 | COPS8 | COP9 signalosome complex subunit 8 | [330] | 1.80[331] | 1.79[332] | 0.87[333] | 2.07[334] | 3.07[335] | 1.22[336] |
49 | RPA1 | Replication protein A 70 kDa DNA-binding subunit | [337] | 2.42[338] | 2.21[339] | 2.22[340] | 2.93[341] | 2.96[342] | 1.30[343] |
50 | RPA3 | Replication protein A 14 kDa subunit | [344] | 0.74[345] | 1.60[346] | 2.05[347] | 0.17[348] | 0.47[349] | 0.61[350] |
51 | GTF2H1 | General transcription factor IIH subunit 1 | [351] | 1.33[352] | 1.57[353] | 1.24[354] | 1.67[355] | 1.24[356] | 1.46[357] |
52 | TFPT | TCF3 fusion partner | [358] | -1.03[359] | -1.35[360] | -0.80[361] | -0.98[362] | 0.16[363] | -2.03[364] |
53 | INO80B | INO80 complex subunit B | [365] | -4.34[366] | -3.84[367] | -4.48[368] | -4.66[369] | -4.73[370] | -4.49[371] |
54 | GTF2H4 | General transcription factor IIH subunit 4 | [372] | 0.86[373] | 1.38[374] | 1.21[375] | 1.39[376] | 0.64[377] | -0.37[378] |
55 | XPA | DNA repair protein complementing XP-A cells | [379] | -1.23[380] | -0.29[381] | -0.89[382] | -0.85[383] | -0.67[384] | 0.61[385] |
56 | CUL4B | Cullin-4B | [386] | 1.01[387] | 2.46[388] | 3.66[389] | 3.39[390] | 4.34[391] | 2.18[392] |
57 | DDB2 | DNA damage-binding protein 2 | [393] | 2.19[394] | 1.77[395] | 0.19[396] | -0.53[397] | 0.07[398] | -0.22[399] |
58 | RFC5 | Replication factor C subunit 5 | [400] | 1.23[401] | 1.75[402] | 1.68[403] | 1.34[404] | 1.89[405] | 0.42[406] |
59 | ERCC5 | DNA repair protein complementing XP-G cells | [407] | -3.67[408] | -2.82[409] | -3.10[410] | -2.67[411] | -2.84[412] | -0.94[413] |
60 | MNAT1 | CDK-activating kinase assembly factor MAT1 | [414] | 0.49[415] | 1.85[416] | 0.76[417] | 1.46[418] | 1.02[419] | 0.35[420] |
61 | COPS7B | COP9 signalosome complex subunit 7b | [421] | 2.06[422] | 2.51[423] | 2.16[424] | 1.69[425] | 1.75[426] | 0.66[427] |
62 | XPC | DNA repair protein complementing XP-C cells | [428] | 2.01[429] | 1.84[430] | 2.45[431] | 1.52[432] | 1.79[433] | 2.54[434] |
63 | GTF2H3 | General transcription factor IIH subunit 3 | [435] | 2.31[436] | 2.79[437] | 2.48[438] | 2.44[439] | 2.23[440] | 1.43[441] |
64 | ERCC2 | TFIIH basal transcription factor complex helicase XPD subunit | [442] | 2.23[443] | 2.33[444] | 2.50[445] | 2.40[446] | 2.33[447] | 0.47[448] |
65 | XRCC1 | DNA repair protein XRCC1 | [449] | 1.74[450] | 1.99[451] | 2.79[452] | 1.84[453] | 1.84[454] | 0.37[455] |
66 | RFC3 | Replication factor C subunit 3 | [456] | 2.28[457] | 3.20[458] | 3.07[459] | 2.33[460] | 2.94[461] | 0.43[462] |
67 | LIG3 | DNA ligase 3 | [463] | 2.28[464] | 2.38[465] | 3.19[466] | 2.16[467] | 1.22[468] | 2.17[469] |
68 | LIG1 | DNA ligase 1 | [470] | 2.74[471] | 2.81[472] | 3.18[473] | 1.59[474] | 2.34[475] | 0.93[476] |
69 | PIAS1 | E3 SUMO-protein ligase PIAS1 | [477] | 1.15[478] | 1.47[479] | 2.10[480] | 1.95[481] | 1.69[482] | 2.48[483] |
70 | ACTR8 | Actin-related protein 8 | [484] | 2.05[485] | 2.29[486] | 0.93[487] | 1.43[488] | 2.29[489] | 2.28[490] |
71 | GTF2H5 | General transcription factor IIH subunit 5 | [491] | 2.70[492] | 3.16[493] | 2.72[494] | 2.35[495] | 2.53[496] | 2.33[497] |
72 | INO80 | DNA helicase INO80 | [498] | 2.42[499] | 2.79[500] | 2.49[501] | 2.84[502] | 2.61[503] | 3.15[504] |
73 | POLD1 | DNA polymerase delta catalytic subunit | [505] | 2.96[506] | 3.25[507] | 3.80[508] | 2.90[509] | 3.68[510] | 1.97[511] |
74 | POLK | DNA polymerase kappa | [512] | 0.26[513] | 1.80[514] | 1.78[515] | 2.91[516] | 2.65[517] | 3.39[518] |
75 | ACTR5 | Actin-related protein 5 | [519] | 2.30[520] | 1.98[521] | 1.19[522] | 1.43[523] | 0.63[524] | 1.52[525] |
76 | RNF111 | E3 ubiquitin-protein ligase Arkadia | [526] | 2.72[527] | 2.59[528] | 2.88[529] | 3.50[530] | 3.20[531] | 3.59[532] |
77 | NFRKB | Nuclear factor related to kappa-B-binding protein | [533] | 3.98[534] | 3.90[535] | 3.58[536] | 3.55[537] | 3.16[538] | 3.60[539] |
78 | POLD3 | DNA polymerase delta subunit 3 | [540] | 2.28[541] | 2.21[542] | 2.91[543] | 3.19[544] | 3.69[545] | 2.28[546] |
79 | POLE | DNA polymerase epsilon catalytic subunit A | [547] | 4.15[548] | 4.83[549] | 4.61[550] | 3.81[551] | 4.84[552] | 4.23[553] |
80 | PIAS3 | E3 SUMO-protein ligase PIAS3 | [554] | 2.41[555] | 1.65[556] | 2.68[557] | 3.79[558] | 3.51[559] | 2.07[560] |
81 | POLE2 | DNA polymerase epsilon subunit 2 | [561] | 1.81[562] | 2.66[563] | 3.38[564] | 2.23[565] | 2.78[566] | 0.14[567] |
82 | ERCC4 | DNA repair endonuclease XPF | [568] | 3.32[569] | 3.06[570] | 2.96[571] | 3.30[572] | 3.47[573] | 3.71[574] |
83 | USP45 | Ubiquitin carboxyl-terminal hydrolase 45 | [575] | 2.53[576] | 4.17[577] | 3.34[578] | 3.83[579] | 3.89[580] | 4.31[581] |
84 | INO80D | INO80 complex subunit D | [582] | 3.25[583] | 5.16[584] | 5.35[585] | 3.64[586] | 3.90[587] | 6.06[588] |