REACTOME_FORMATION_OF_TC_NER_PRE_INCISION_COMPLEX Return to index
Order Gene Description ref_hepatocyte HepG2 HepG2.C3A HuH.7 SNU475 THLE liver
1 UBB Polyubiquitin-B [1] -0.90[2] -1.15[3] -1.21[4] -1.19[5] -0.99[6] -0.35[7]
2 RPS27A Ubiquitin-40S ribosomal protein S27a [8] [9] [10] [11] [12] [13] [14]
3 UBC Polyubiquitin-C [15] -0.46[16] -0.40[17] -0.84[18] -0.34[19] -0.62[20] 0.11[21]
4 HMGN1 Non-histone chromosomal protein HMG-14 [22] -1.36[23] -1.37[24] -1.72[25] -1.21[26] -1.32[27] -2.46[28]
5 POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5 [29] -1.18[30] -1.24[31] -1.68[32] -0.61[33] -0.93[34] 0.19[35]
6 UBA52 Ubiquitin-60S ribosomal protein L40 [36] 1.98[37] 1.83[38] 2.67[39] 1.06[40] 1.61[41] 0.87[42]
7 RBX1 E3 ubiquitin-protein ligase RBX1 [43] -0.76[44] -0.38[45] -0.70[46] -1.12[47] -0.95[48] -0.57[49]
8 COPS6 COP9 signalosome complex subunit 6 [50] 0.08[51] -0.15[52] -0.36[53] 0.48[54] 0.49[55] 0.08[56]
9 POLR2J DNA-directed RNA polymerase II subunit RPB11-a [57] -1.87[58] -1.64[59] -1.56[60] -1.84[61] -1.77[62] -1.55[63]
10 PRPF19 Pre-mRNA-processing factor 19 [64] 1.58[65] 1.07[66] 2.38[67] 1.04[68] 1.16[69] -0.13[70]
11 DDB1 DNA damage-binding protein 1 [71] 2.91[72] 2.22[73] 3.15[74] 2.43[75] 2.20[76] 2.13[77]
12 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 [78] 1.90[79] 1.81[80] 1.69[81] 1.02[82] 1.62[83] 2.01[84]
13 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 [85] -0.28[86] 0.30[87] 0.06[88] -1.08[89] -0.66[90] -0.42[91]
14 TCEA1 Transcription elongation factor A protein 1 [92] 1.63[93] 2.14[94] 1.36[95] 2.44[96] 2.00[97] 1.81[98]
15 POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2 [99] 0.03[100] 0.22[101] -0.81[102] -1.01[103] -0.54[104] 0.46[105]
16 POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 [106] -0.29[107] 0.51[108] 0.20[109] 0.63[110] 0.28[111] 0.25[112]
17 POLR2G DNA-directed RNA polymerase II subunit RPB7 [113] 0.13[114] 0.36[115] -0.35[116] 0.43[117] 0.05[118] -0.30[119]
18 GPS1 COP9 signalosome complex subunit 1 [120] 1.88[121] 1.84[122] 0.87[123] 1.40[124] 1.06[125] 1.35[126]
19 COPS5 COP9 signalosome complex subunit 5 [127] 0.02[128] 0.81[129] 0.82[130] 1.43[131] 0.72[132] 1.04[133]
20 COPS3 COP9 signalosome complex subunit 3 [134] 0.98[135] 1.03[136] 1.25[137] 1.74[138] 1.52[139] 0.40[140]
21 POLR2C DNA-directed RNA polymerase II subunit RPB3 [141] 2.12[142] 2.18[143] 1.46[144] 1.35[145] 1.32[146] 1.08[147]
22 COPS7A COP9 signalosome complex subunit 7a [148] 0.83[149] 1.21[150] 0.83[151] 0.87[152] 0.95[153] 1.11[154]
23 CUL4A Cullin-4A [155] 1.53[156] 1.76[157] 0.85[158] 1.52[159] 1.07[160] 2.11[161]
24 CCNH Cyclin-H [162] -0.37[163] 0.43[164] -0.38[165] -0.19[166] 0.94[167] 0.61[168]
25 COPS2 COP9 signalosome complex subunit 2 [169] 0.47[170] 2.40[171] 2.42[172] 1.91[173] 1.86[174] 1.13[175]
26 POLR2I DNA-directed RNA polymerase II subunit RPB9 [176] -0.29[177] -0.21[178] -0.50[179] -0.69[180] -0.86[181] 0.50[182]
27 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit [183] 1.18[184] 1.38[185] 0.58[186] 1.14[187] 1.33[188] 0.83[189]
28 USP7 Ubiquitin carboxyl-terminal hydrolase 7 [190] 2.86[191] 2.61[192] 1.78[193] 1.69[194] 1.80[195] 2.07[196]
29 CDK7 Cyclin-dependent kinase 7 [197] 0.65[198] 1.61[199] 1.12[200] 1.02[201] 0.44[202] -0.82[203]
30 PPIE Peptidyl-prolyl cis-trans isomerase E [204] 0.23[205] -0.04[206] 0.05[207] 1.51[208] 1.47[209] 0.65[210]
31 POLR2B DNA-directed RNA polymerase II subunit RPB2 [211] 2.52[212] 2.85[213] 2.57[214] 2.70[215] 3.13[216] 2.48[217]
32 GTF2H2 General transcription factor IIH subunit 2 [218] -4.10[219] -3.21[220] -3.63[221] -3.59[222] -5.10[223] -3.14[224]
33 POLR2D DNA-directed RNA polymerase II subunit RPB4 [225] 1.55[226] 1.63[227] 0.72[228] 1.18[229] 1.15[230] 1.09[231]
34 COPS4 COP9 signalosome complex subunit 4 [232] 0.77[233] 1.70[234] 1.39[235] 1.42[236] 1.39[237] 1.09[238]
35 XAB2 Pre-mRNA-splicing factor SYF1 [239] 1.35[240] 1.24[241] 1.99[242] 1.16[243] 1.38[244] 0.67[245]
36 COPS8 COP9 signalosome complex subunit 8 [246] 1.99[247] 1.88[248] 1.02[249] 2.58[250] 3.30[251] 1.45[252]
37 GTF2H1 General transcription factor IIH subunit 1 [253] 1.52[254] 1.65[255] 1.39[256] 2.18[257] 1.48[258] 1.69[259]
38 ZNF830 Zinc finger protein 830 [260] -0.37[261] -0.05[262] 0.70[263] -0.24[264] -0.16[265] 0.07[266]
39 POLR2A DNA-directed RNA polymerase II subunit RPB1 [267] 4.03[268] 2.51[269] 3.30[270] 3.74[271] 3.87[272] 3.32[273]
40 GTF2H4 General transcription factor IIH subunit 4 [274] 1.05[275] 1.47[276] 1.35[277] 1.90[278] 0.87[279] -0.13[280]
41 XPA DNA repair protein complementing XP-A cells [281] -1.04[282] -0.21[283] -0.75[284] -0.34[285] -0.43[286] 0.85[287]
42 CUL4B Cullin-4B [288] 1.20[289] 2.54[290] 3.81[291] 3.90[292] 4.58[293] 2.41[294]
43 MNAT1 CDK-activating kinase assembly factor MAT1 [295] 0.68[296] 1.93[297] 0.90[298] 1.97[299] 1.25[300] 0.58[301]
44 COPS7B COP9 signalosome complex subunit 7b [302] 2.25[303] 2.59[304] 2.31[305] 2.20[306] 1.98[307] 0.89[308]
45 GTF2H3 General transcription factor IIH subunit 3 [309] 2.50[310] 2.87[311] 2.62[312] 2.95[313] 2.46[314] 1.66[315]
46 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit [316] 2.42[317] 2.42[318] 2.65[319] 2.91[320] 2.56[321] 0.70[322]
47 ISY1 Pre-mRNA-splicing factor ISY1 homolog [323] 0.73[324] 0.82[325] 0.42[326] 1.26[327] 1.21[328] 0.86[329]
48 AQR Intron-binding protein aquarius [330] 2.66[331] 2.88[332] 2.80[333] 3.77[334] 3.55[335] 3.42[336]
49 GTF2H5 General transcription factor IIH subunit 5 [337] 2.89[338] 3.24[339] 2.86[340] 2.86[341] 2.77[342] 2.56[343]
50 EP300 Histone acetyltransferase p300 [344] 4.02[345] 3.56[346] 4.25[347] 4.16[348] 3.95[349] 4.28[350]
51 ERCC8 DNA excision repair protein ERCC-8 [351] 2.08[352] 3.15[353] 2.09[354] 1.17[355] 2.22[356] 1.58[357]
52 ERCC6 DNA excision repair protein ERCC-6 [358] 2.59[359] 3.31[360] 1.25[361] 4.90[362] 3.72[363] 4.76[364]
53 UVSSA UV-stimulated scaffold protein A [365] [366] [367] [368] [369] [370] [371]
[1]
ref_hepatocyte UBB
Mean 764
Standard deviation 4.8e+02
Values 3.8e+02 3.5e+02 5.3e+02 1.2e+03 1.3e+03
[2]
HepG2 UBB
Mean 368
Standard deviation 39
Values 4e+02 3.4e+02
[3]
HepG2.C3A UBB
Mean 285
Standard deviation 14
Values 2.8e+02 3e+02
[4]
HuH.7 UBB
Mean 304
Standard deviation 40
Values 2.9e+02 2.7e+02 3.5e+02
[5]
SNU475 UBB
Mean 204
Standard deviation 3.3
Values 2.1e+02 2e+02
[6]
THLE UBB
Mean 315
Standard deviation 34
Values 2.9e+02 3.4e+02
[7]
liver UBB
Mean 296
Standard deviation 1.3e+02
Values 4.3e+02 2.1e+02 3.9e+02 1.5e+02
[8]
ref_hepatocyte RPS27A
Mean 499
Standard deviation 2.2e+02
Values 6.6e+02 6.1e+02 1.7e+02 6.8e+02 3.8e+02
[9]
HepG2 RPS27A
Missing
[10]
HepG2.C3A RPS27A
Missing
[11]
HuH.7 RPS27A
Missing
[12]
SNU475 RPS27A
Missing
[13]
THLE RPS27A
Missing
[14]
liver RPS27A
Missing
[15]
ref_hepatocyte UBC
Mean 480
Standard deviation 2.8e+02
Values 1.8e+02 3.5e+02 9.1e+02 5.8e+02 3.8e+02
[16]
HepG2 UBC
Mean 314
Standard deviation 38
Values 3.4e+02 2.9e+02
[17]
HepG2.C3A UBC
Mean 302
Standard deviation 41
Values 3.3e+02 2.7e+02
[18]
HuH.7 UBC
Mean 246
Standard deviation 64
Values 2.4e+02 3.1e+02 1.9e+02
[19]
SNU475 UBC
Mean 232
Standard deviation 63
Values 2.8e+02 1.9e+02
[20]
THLE UBC
Mean 257
Standard deviation 41
Values 2.3e+02 2.9e+02
[21]
liver UBC
Mean 254
Standard deviation 78
Values 2.2e+02 3.1e+02 3.3e+02 1.6e+02
[22]
ref_hepatocyte HMGN1
Mean 281
Standard deviation 3.3e+02
Values 6.5e+02 6.2e+02 36 46 51
[23]
HepG2 HMGN1
Mean 98.3
Standard deviation 22
Values 83 1.1e+02
[24]
HepG2.C3A HMGN1
Mean 90.4
Standard deviation 29
Values 70 1.1e+02
[25]
HuH.7 HMGN1
Mean 78.6
Standard deviation 29
Values 76 51 1.1e+02
[26]
SNU475 HMGN1
Mean 74.3
Standard deviation 21
Values 89 59
[27]
THLE HMGN1
Mean 92.6
Standard deviation 17
Values 80 1e+02
[28]
liver HMGN1
Mean 25.2
Standard deviation 17
Values 24 20 48 8
[29]
ref_hepatocyte POLR2L
Mean 67.8
Standard deviation 41
Values 12 45 1.2e+02 88 75
[30]
HepG2 POLR2L
Mean 26.9
Standard deviation 9.4
Values 20 34
[31]
HepG2.C3A POLR2L
Mean 23.8
Standard deviation 11
Values 16 31
[32]
HuH.7 POLR2L
Mean 19.4
Standard deviation 11
Values 20 8.1 30
[33]
SNU475 POLR2L
Mean 27.1
Standard deviation 4.2
Values 30 24
[34]
THLE POLR2L
Mean 29.2
Standard deviation 3.5
Values 27 32
[35]
liver POLR2L
Mean 38.1
Standard deviation 40
Values 74 3.8 71 3.9
[36]
ref_hepatocyte UBA52
Mean 57.3
Standard deviation 43
Values 14 23 49 1.2e+02 81
[37]
HepG2 UBA52
Mean 203
Standard deviation 20
Values 2.2e+02 1.9e+02
[38]
HepG2.C3A UBA52
Mean 169
Standard deviation 3.3
Values 1.7e+02 1.7e+02
[39]
HuH.7 UBA52
Mean 334
Standard deviation 46
Values 3.4e+02 2.8e+02 3.7e+02
[40]
SNU475 UBA52
Mean 72.9
Standard deviation 11
Values 65 81
[41]
THLE UBA52
Mean 144
Standard deviation 15
Values 1.3e+02 1.5e+02
[42]
liver UBA52
Mean 51.7
Standard deviation 26
Values 79 32 68 28
[43]
ref_hepatocyte RBX1
Mean 54.3
Standard deviation 41
Values 88 1.1e+02 7.4 33 36
[44]
HepG2 RBX1
Mean 28.8
Standard deviation 5.7
Values 25 33
[45]
HepG2.C3A RBX1
Mean 34.6
Standard deviation 13
Values 26 44
[46]
HuH.7 RBX1
Mean 30.6
Standard deviation 15
Values 29 17 46
[47]
SNU475 RBX1
Mean 15.3
Standard deviation 1.3
Values 16 14
[48]
THLE RBX1
Mean 23
Standard deviation 3.5
Values 21 25
[49]
liver RBX1
Mean 18
Standard deviation 18
Values 36 2.5 32 1.8
[50]
ref_hepatocyte COPS6
Mean 39.1
Standard deviation 14
Values 37 61 28 42 27
[51]
HepG2 COPS6
Mean 37.1
Standard deviation 3.9
Values 40 34
[52]
HepG2.C3A COPS6
Mean 29.3
Standard deviation 0.85
Values 29 30
[53]
HuH.7 COPS6
Mean 27.9
Standard deviation 8
Values 31 19 34
[54]
SNU475 COPS6
Mean 33.4
Standard deviation 1.4
Values 32 34
[55]
THLE COPS6
Mean 45.2
Standard deviation 4.9
Values 42 49
[56]
liver COPS6
Mean 20.4
Standard deviation 17
Values 32 6.4 37 5.9
[57]
ref_hepatocyte POLR2J
Mean 37.5
Standard deviation 21
Values 11 18 56 56 47
[58]
HepG2 POLR2J
Mean 9.2
Standard deviation 0.083
Values 9.3 9.1
[59]
HepG2.C3A POLR2J
Mean 10
Standard deviation 2.4
Values 8.3 12
[60]
HuH.7 POLR2J
Mean 11.7
Standard deviation 3.3
Values 12 8.1 15
[61]
SNU475 POLR2J
Mean 6.41
Standard deviation 0.42
Values 6.7 6.1
[62]
THLE POLR2J
Mean 9.03
Standard deviation 0.31
Values 9.2 8.8
[63]
liver POLR2J
Mean 6.28
Standard deviation 6.7
Values 14 0.84 9.4 0.7
[64]
ref_hepatocyte PRPF19
Mean 31
Standard deviation 25
Values 9.2 16 72 34 24
[65]
HepG2 PRPF19
Mean 83
Standard deviation 5.5
Values 87 79
[66]
HepG2.C3A PRPF19
Mean 53.8
Standard deviation 3.9
Values 51 57
[67]
HuH.7 PRPF19
Mean 148
Standard deviation 46
Values 1.7e+02 96 1.8e+02
[68]
SNU475 PRPF19
Mean 39
Standard deviation 3.5
Values 37 41
[69]
THLE PRPF19
Mean 56.7
Standard deviation 11
Values 49 65
[70]
liver PRPF19
Mean 13.9
Standard deviation 4
Values 12 19 9.9 15
[71]
ref_hepatocyte DDB1
Mean 30
Standard deviation 15
Values 53 38 23 21 16
[72]
HepG2 DDB1
Mean 203
Standard deviation 1.9
Values 2e+02 2e+02
[73]
HepG2.C3A DDB1
Mean 116
Standard deviation 17
Values 1.3e+02 1e+02
[74]
HuH.7 DDB1
Mean 245
Standard deviation 45
Values 2.9e+02 2e+02 2.5e+02
[75]
SNU475 DDB1
Mean 98.5
Standard deviation 13
Values 1.1e+02 89
[76]
THLE DDB1
Mean 113
Standard deviation 22
Values 97 1.3e+02
[77]
liver DDB1
Mean 64.5
Standard deviation 20
Values 37 78 64 79
[78]
ref_hepatocyte POLR2E
Mean 27.9
Standard deviation 6.6
Values 19 23 30 33 35
[79]
HepG2 POLR2E
Mean 93.8
Standard deviation 2.1
Values 95 92
[80]
HepG2.C3A POLR2E
Mean 81.1
Standard deviation 3.3
Values 83 79
[81]
HuH.7 POLR2E
Mean 82.6
Standard deviation 22
Values 97 58 93
[82]
SNU475 POLR2E
Mean 34.6
Standard deviation 3.7
Values 37 32
[83]
THLE POLR2E
Mean 70.5
Standard deviation 6.2
Values 66 75
[84]
liver POLR2E
Mean 55.3
Standard deviation 38
Values 84 18 92 27
[85]
ref_hepatocyte POLR2H
Mean 27.5
Standard deviation 6.8
Values 24 25 29 38 21
[86]
HepG2 POLR2H
Mean 20.4
Standard deviation 2.4
Values 19 22
[87]
HepG2.C3A POLR2H
Mean 28
Standard deviation 0.23
Values 28 28
[88]
HuH.7 POLR2H
Mean 26.4
Standard deviation 6.6
Values 24 21 34
[89]
SNU475 POLR2H
Mean 7.91
Standard deviation 0.017
Values 7.9 7.9
[90]
THLE POLR2H
Mean 14.3
Standard deviation 0.26
Values 14 14
[91]
liver POLR2H
Mean 10.1
Standard deviation 4.7
Values 14 6.5 14 5.4
[92]
ref_hepatocyte TCEA1
Mean 24.8
Standard deviation 4.1
Values 27 31 21 21 25
[93]
HepG2 TCEA1
Mean 69.1
Standard deviation 1.9
Values 68 70
[94]
HepG2.C3A TCEA1
Mean 91
Standard deviation 3.3
Values 89 93
[95]
HuH.7 TCEA1
Mean 58.8
Standard deviation 7
Values 56 67 54
[96]
SNU475 TCEA1
Mean 82.2
Standard deviation 5
Values 86 79
[97]
THLE TCEA1
Mean 81.8
Standard deviation 4.1
Values 85 79
[98]
liver TCEA1
Mean 42.8
Standard deviation 15
Values 62 36 45 28
[99]
ref_hepatocyte POLR2F
Mean 24.8
Standard deviation 6.1
Values 23 34 19 28 21
[100]
HepG2 POLR2F
Mean 22.8
Standard deviation 0.98
Values 22 23
[101]
HepG2.C3A POLR2F
Mean 23.9
Standard deviation 6.4
Values 19 28
[102]
HuH.7 POLR2F
Mean 13
Standard deviation 3.5
Values 13 9.7 17
[103]
SNU475 POLR2F
Mean 7.49
Standard deviation 0.4
Values 7.2 7.8
[104]
THLE POLR2F
Mean 14
Standard deviation 3
Values 12 16
[105]
liver POLR2F
Mean 16.8
Standard deviation 16
Values 36 4.2 24 2.4
[106]
ref_hepatocyte POLR2K
Mean 24.4
Standard deviation 5.5
Values 20 27 17 29 29
[107]
HepG2 POLR2K
Mean 17.9
Standard deviation 2.7
Values 16 20
[108]
HepG2.C3A POLR2K
Mean 28.8
Standard deviation 10
Values 22 36
[109]
HuH.7 POLR2K
Mean 25.7
Standard deviation 7.6
Values 25 19 34
[110]
SNU475 POLR2K
Mean 23.1
Standard deviation 3.2
Values 25 21
[111]
THLE POLR2K
Mean 24.3
Standard deviation 2.2
Values 23 26
[112]
liver POLR2K
Mean 14.3
Standard deviation 12
Values 26 5.3 23 3.1
[113]
ref_hepatocyte POLR2G
Mean 24.2
Standard deviation 8.6
Values 18 28 13 34 28
[114]
HepG2 POLR2G
Mean 23.8
Standard deviation 0.4
Values 24 24
[115]
HepG2.C3A POLR2G
Mean 25.8
Standard deviation 7.7
Values 20 31
[116]
HuH.7 POLR2G
Mean 17.4
Standard deviation 8.7
Values 15 10 27
[117]
SNU475 POLR2G
Mean 19.9
Standard deviation 4.4
Values 23 17
[118]
THLE POLR2G
Mean 20.5
Standard deviation 2.2
Values 19 22
[119]
liver POLR2G
Mean 9.68
Standard deviation 8.6
Values 14 2.8 20 2.3
[120]
ref_hepatocyte GPS1
Mean 21.1
Standard deviation 9
Values 20 11 14 30 31
[121]
HepG2 GPS1
Mean 70
Standard deviation 0.92
Values 71 69
[122]
HepG2.C3A GPS1
Mean 62.8
Standard deviation 6.9
Values 68 58
[123]
HuH.7 GPS1
Mean 35.5
Standard deviation 12
Values 39 22 45
[124]
SNU475 GPS1
Mean 34.2
Standard deviation 1.5
Values 33 35
[125]
THLE GPS1
Mean 36.2
Standard deviation 3.1
Values 34 38
[126]
liver GPS1
Mean 26.5
Standard deviation 12
Values 38 15 35 18
[127]
ref_hepatocyte COPS5
Mean 20
Standard deviation 6.3
Values 11 24 17 26 21
[128]
HepG2 COPS5
Mean 18.3
Standard deviation 5.3
Values 15 22
[129]
HepG2.C3A COPS5
Mean 29.1
Standard deviation 8.3
Values 23 35
[130]
HuH.7 COPS5
Mean 32.4
Standard deviation 7.4
Values 31 26 40
[131]
SNU475 COPS5
Mean 32.9
Standard deviation 0.48
Values 33 33
[132]
THLE COPS5
Mean 27.1
Standard deviation 0.97
Values 26 28
[133]
liver COPS5
Mean 20.3
Standard deviation 13
Values 33 9.5 30 8.7
[134]
ref_hepatocyte COPS3
Mean 19.5
Standard deviation 6.5
Values 20 28 20 19 10
[135]
HepG2 COPS3
Mean 34.7
Standard deviation 6.1
Values 30 39
[136]
HepG2.C3A COPS3
Mean 33.1
Standard deviation 9
Values 27 39
[137]
HuH.7 COPS3
Mean 42.8
Standard deviation 7
Values 46 35 47
[138]
SNU475 COPS3
Mean 39.7
Standard deviation 4
Values 37 43
[139]
THLE COPS3
Mean 45.9
Standard deviation 6.1
Values 42 50
[140]
liver COPS3
Mean 12.6
Standard deviation 5.1
Values 15 9.6 19 7.4
[141]
ref_hepatocyte POLR2C
Mean 17.6
Standard deviation 4.3
Values 15 13 24 20 17
[142]
HepG2 POLR2C
Mean 68.6
Standard deviation 8
Values 63 74
[143]
HepG2.C3A POLR2C
Mean 66
Standard deviation 11
Values 58 74
[144]
HuH.7 POLR2C
Mean 44.6
Standard deviation 6.4
Values 45 38 51
[145]
SNU475 POLR2C
Mean 27.4
Standard deviation 1.2
Values 28 27
[146]
THLE POLR2C
Mean 36.1
Standard deviation 1
Values 37 35
[147]
liver POLR2C
Mean 18.3
Standard deviation 4.9
Values 20 16 24 13
[148]
ref_hepatocyte COPS7A
Mean 17
Standard deviation 3.8
Values 11 19 15 20 19
[149]
HepG2 COPS7A
Mean 27.2
Standard deviation 1.5
Values 26 28
[150]
HepG2.C3A COPS7A
Mean 32.6
Standard deviation 3.3
Values 30 35
[151]
HuH.7 COPS7A
Mean 27.8
Standard deviation 10
Values 28 18 38
[152]
SNU475 COPS7A
Mean 18.9
Standard deviation 3.1
Values 21 17
[153]
THLE COPS7A
Mean 26.9
Standard deviation 5.7
Values 23 31
[154]
liver COPS7A
Mean 18.1
Standard deviation 8.8
Values 27 11 25 10
[155]
ref_hepatocyte CUL4A
Mean 16
Standard deviation 6.9
Values 19 27 13 9.6 12
[156]
HepG2 CUL4A
Mean 41.5
Standard deviation 1.9
Values 43 40
[157]
HepG2.C3A CUL4A
Mean 44.9
Standard deviation 3.6
Values 47 42
[158]
HuH.7 CUL4A
Mean 26.5
Standard deviation 5
Values 28 21 30
[159]
SNU475 CUL4A
Mean 27.9
Standard deviation 6.1
Values 32 24
[160]
THLE CUL4A
Mean 27.4
Standard deviation 7
Values 22 32
[161]
liver CUL4A
Mean 33.9
Standard deviation 5.6
Values 27 39 38 32
[162]
ref_hepatocyte CCNH
Mean 15.2
Standard deviation 4.9
Values 13 23 13 17 10
[163]
HepG2 CCNH
Mean 10.6
Standard deviation 1.9
Values 9.2 12
[164]
HepG2.C3A CCNH
Mean 17
Standard deviation 5.2
Values 13 21
[165]
HuH.7 CCNH
Mean 10.7
Standard deviation 2.1
Values 10 8.7 13
[166]
SNU475 CCNH
Mean 8.14
Standard deviation 0.45
Values 7.8 8.5
[167]
THLE CCNH
Mean 23.9
Standard deviation 3.5
Values 21 26
[168]
liver CCNH
Mean 11.4
Standard deviation 3.1
Values 13 10 14 7.6
[169]
ref_hepatocyte COPS2
Mean 14.9
Standard deviation 6.3
Values 20 23 13 8.9 9.3
[170]
HepG2 COPS2
Mean 18.5
Standard deviation 5.5
Values 15 22
[171]
HepG2.C3A COPS2
Mean 65.2
Standard deviation 12
Values 57 73
[172]
HuH.7 COPS2
Mean 73.2
Standard deviation 21
Values 70 96 54
[173]
SNU475 COPS2
Mean 34
Standard deviation 4.2
Values 31 37
[174]
THLE COPS2
Mean 44.2
Standard deviation 5.6
Values 48 40
[175]
liver COPS2
Mean 16
Standard deviation 2.1
Values 17 18 16 13
[176]
ref_hepatocyte POLR2I
Mean 14.8
Standard deviation 8.2
Values 6.7 5.5 20 18 24
[177]
HepG2 POLR2I
Mean 10.9
Standard deviation 0.95
Values 12 10
[178]
HepG2.C3A POLR2I
Mean 10.6
Standard deviation 0.63
Values 10 11
[179]
HuH.7 POLR2I
Mean 9.58
Standard deviation 4.2
Values 9.6 5.4 14
[180]
SNU475 POLR2I
Mean 5.6
Standard deviation 1.6
Values 4.4 6.8
[181]
THLE POLR2I
Mean 6.67
Standard deviation 0.3
Values 6.9 6.5
[182]
liver POLR2I
Mean 10.3
Standard deviation 10
Values 20 2.1 19 0.83
[183]
ref_hepatocyte ERCC3
Mean 14.3
Standard deviation 12
Values 32 22 7.9 5.7 4.5
[184]
HepG2 ERCC3
Mean 29.2
Standard deviation 0.049
Values 29 29
[185]
HepG2.C3A ERCC3
Mean 30.9
Standard deviation 3.7
Values 28 34
[186]
HuH.7 ERCC3
Mean 19.7
Standard deviation 4.7
Values 19 15 25
[187]
SNU475 ERCC3
Mean 19.2
Standard deviation 0.056
Values 19 19
[188]
THLE ERCC3
Mean 29.5
Standard deviation 3.2
Values 27 32
[189]
liver ERCC3
Mean 12.5
Standard deviation 0.77
Values 13 12 12 13
[190]
ref_hepatocyte USP7
Mean 13.8
Standard deviation 9.3
Values 30 11 13 8.6 6.8
[191]
HepG2 USP7
Mean 90
Standard deviation 14
Values 80 1e+02
[192]
HepG2.C3A USP7
Mean 69.8
Standard deviation 2.3
Values 68 71
[193]
HuH.7 USP7
Mean 43.7
Standard deviation 8.8
Values 52 35 44
[194]
SNU475 USP7
Mean 27.1
Standard deviation 1.8
Values 26 28
[195]
THLE USP7
Mean 39.6
Standard deviation 7.8
Values 34 45
[196]
liver USP7
Mean 28.4
Standard deviation 9.3
Values 24 38 18 34
[197]
ref_hepatocyte CDK7
Mean 12
Standard deviation 6.1
Values 16 14 19 5.4 5.6
[198]
HepG2 CDK7
Mean 16.9
Standard deviation 3.8
Values 14 20
[199]
HepG2.C3A CDK7
Mean 30.4
Standard deviation 2.1
Values 29 32
[200]
HuH.7 CDK7
Mean 24
Standard deviation 1.4
Values 23 24 25
[201]
SNU475 CDK7
Mean 14.9
Standard deviation 0.18
Values 15 15
[202]
THLE CDK7
Mean 13.3
Standard deviation 2.2
Values 12 15
[203]
liver CDK7
Mean 3.33
Standard deviation 1.6
Values 4.4 2.2 5 1.7
[204]
ref_hepatocyte PPIE
Mean 12
Standard deviation 4.7
Values 4.6 16 13 16 11
[205]
HepG2 PPIE
Mean 12.6
Standard deviation 2.6
Values 14 11
[206]
HepG2.C3A PPIE
Mean 9.64
Standard deviation 0.66
Values 9.2 10
[207]
HuH.7 PPIE
Mean 11.4
Standard deviation 3
Values 11 8.6 15
[208]
SNU475 PPIE
Mean 20.8
Standard deviation 0.42
Values 20 21
[209]
THLE PPIE
Mean 27.3
Standard deviation 0.047
Values 27 27
[210]
liver PPIE
Mean 9.26
Standard deviation 4.9
Values 13 5.4 14 4.6
[211]
ref_hepatocyte POLR2B
Mean 11.1
Standard deviation 5.1
Values 14 19 8.6 7.8 6.5
[212]
HepG2 POLR2B
Mean 56.9
Standard deviation 17
Values 45 69
[213]
HepG2.C3A POLR2B
Mean 66.2
Standard deviation 18
Values 54 79
[214]
HuH.7 POLR2B
Mean 60.6
Standard deviation 7.6
Values 65 52 65
[215]
SNU475 POLR2B
Mean 43.8
Standard deviation 2.4
Values 42 46
[216]
THLE POLR2B
Mean 79.8
Standard deviation 7.8
Values 74 85
[217]
liver POLR2B
Mean 30.4
Standard deviation 5.1
Values 27 37 26 33
[218]
ref_hepatocyte GTF2H2
Mean 10.7
Standard deviation 11
Values 9.1 31 3.3 2.8 7.7
[219]
HepG2 GTF2H2
Mean 0.557
Standard deviation 0.023
Values 0.57 0.54
[220]
HepG2.C3A GTF2H2
Mean 0.956
Standard deviation 0.074
Values 0.9 1
[221]
HuH.7 GTF2H2
Mean 0.792
Standard deviation 0.083
Values 0.86 0.7 0.82
[222]
SNU475 GTF2H2
Mean 0.539
Standard deviation 0.12
Values 0.63 0.45
[223]
THLE GTF2H2
Mean 0.254
Standard deviation 0.017
Values 0.24 0.27
[224]
liver GTF2H2
Mean 0.594
Standard deviation 0.13
Values 0.54 0.66 0.44 0.74
[225]
ref_hepatocyte POLR2D
Mean 10.5
Standard deviation 5.2
Values 17 13 12 6.5 4.1
[226]
HepG2 POLR2D
Mean 27.7
Standard deviation 1.1
Values 27 29
[227]
HepG2.C3A POLR2D
Mean 27
Standard deviation 7.8
Values 22 33
[228]
HuH.7 POLR2D
Mean 15.9
Standard deviation 5.1
Values 19 10 19
[229]
SNU475 POLR2D
Mean 14.6
Standard deviation 0.75
Values 14 15
[230]
THLE POLR2D
Mean 19.2
Standard deviation 4.2
Values 16 22
[231]
liver POLR2D
Mean 11
Standard deviation 2.8
Values 13 8.6 14 8.7
[232]
ref_hepatocyte COPS4
Mean 9.38
Standard deviation 2.5
Values 8.2 10 5.9 9.7 13
[233]
HepG2 COPS4
Mean 14.4
Standard deviation 3.5
Values 12 17
[234]
HepG2.C3A COPS4
Mean 25.3
Standard deviation 3.9
Values 23 28
[235]
HuH.7 COPS4
Mean 22.5
Standard deviation 0.33
Values 22 23 22
[236]
SNU475 COPS4
Mean 15.3
Standard deviation 1.1
Values 16 15
[237]
THLE COPS4
Mean 20.2
Standard deviation 1.4
Values 19 21
[238]
liver COPS4
Mean 9.82
Standard deviation 5.8
Values 12 6.4 17 3.9
[239]
ref_hepatocyte XAB2
Mean 9.13
Standard deviation 3.1
Values 4.7 7.7 13 10 10
[240]
HepG2 XAB2
Mean 20.9
Standard deviation 3.5
Values 23 18
[241]
HepG2.C3A XAB2
Mean 17.9
Standard deviation 4.7
Values 21 15
[242]
HuH.7 XAB2
Mean 33.3
Standard deviation 2.6
Values 35 30 34
[243]
SNU475 XAB2
Mean 12.5
Standard deviation 1.9
Values 11 14
[244]
THLE XAB2
Mean 19.5
Standard deviation 0.94
Values 19 20
[245]
liver XAB2
Mean 7.15
Standard deviation 1.4
Values 5.9 7.1 6.5 9.1
[246]
ref_hepatocyte COPS8
Mean 8.88
Standard deviation 1.9
Values 12 10 7.8 8.1 6.9
[247]
HepG2 COPS8
Mean 31.8
Standard deviation 11
Values 24 40
[248]
HepG2.C3A COPS8
Mean 27
Standard deviation 13
Values 18 36
[249]
HuH.7 COPS8
Mean 16.5
Standard deviation 5.6
Values 18 10 21
[250]
SNU475 COPS8
Mean 32.5
Standard deviation 2.9
Values 35 30
[251]
THLE COPS8
Mean 71.8
Standard deviation 5.6
Values 68 76
[252]
liver COPS8
Mean 11.9
Standard deviation 7.3
Values 13 8 22 4.9
[253]
ref_hepatocyte GTF2H1
Mean 8.08
Standard deviation 4.5
Values 8.5 16 5.2 6.3 4.6
[254]
HepG2 GTF2H1
Mean 20.9
Standard deviation 4.8
Values 18 24
[255]
HepG2.C3A GTF2H1
Mean 21
Standard deviation 5.4
Values 17 25
[256]
HuH.7 GTF2H1
Mean 19.4
Standard deviation 2.3
Values 17 19 22
[257]
SNU475 GTF2H1
Mean 22.4
Standard deviation 0.028
Values 22 22
[258]
THLE GTF2H1
Mean 18.5
Standard deviation 2.7
Values 17 20
[259]
liver GTF2H1
Mean 12.9
Standard deviation 1.7
Values 12 15 12 12
[260]
ref_hepatocyte ZNF830
Mean 7.92
Standard deviation 3.5
Values 11 11 9.8 4.1 4
[261]
HepG2 ZNF830
Mean 5.51
Standard deviation 0.33
Values 5.3 5.7
[262]
HepG2.C3A ZNF830
Mean 6.34
Standard deviation 0.79
Values 5.8 6.9
[263]
HuH.7 ZNF830
Mean 11.8
Standard deviation 4.8
Values 11 7.2 17
[264]
SNU475 ZNF830
Mean 4.09
Standard deviation 0.48
Values 3.7 4.4
[265]
THLE ZNF830
Mean 5.81
Standard deviation 0.34
Values 5.6 6.1
[266]
liver ZNF830
Mean 4.1
Standard deviation 2.1
Values 4.6 2.6 6.9 2.4
[267]
ref_hepatocyte POLR2A
Mean 7.79
Standard deviation 4.5
Values 9.5 5.3 15 4.9 4.5
[268]
HepG2 POLR2A
Mean 114
Standard deviation 23
Values 98 1.3e+02
[269]
HepG2.C3A POLR2A
Mean 37
Standard deviation 6.8
Values 32 42
[270]
HuH.7 POLR2A
Mean 70.7
Standard deviation 33
Values 1.1e+02 40 66
[271]
SNU475 POLR2A
Mean 63.7
Standard deviation 8.3
Values 70 58
[272]
THLE POLR2A
Mean 93.7
Standard deviation 26
Values 75 1.1e+02
[273]
liver POLR2A
Mean 38.4
Standard deviation 3.6
Values 41 33 40 40
[274]
ref_hepatocyte GTF2H4
Mean 7.21
Standard deviation 1.9
Values 5.6 4.9 9.1 8.2 8.4
[275]
HepG2 GTF2H4
Mean 13.4
Standard deviation 0.51
Values 14 13
[276]
HepG2.C3A GTF2H4
Mean 16.5
Standard deviation 0.89
Values 17 16
[277]
HuH.7 GTF2H4
Mean 16.9
Standard deviation 3.1
Values 16 14 20
[278]
SNU475 GTF2H4
Mean 16.5
Standard deviation 1.8
Values 18 15
[279]
THLE GTF2H4
Mean 10.8
Standard deviation 0.16
Values 11 11
[280]
liver GTF2H4
Mean 3.23
Standard deviation 0.65
Values 3.9 2.6 2.8 3.7
[281]
ref_hepatocyte XPA
Mean 6.81
Standard deviation 3.3
Values 12 6.7 3.1 6 6
[282]
HepG2 XPA
Mean 2.99
Standard deviation 0.21
Values 3.1 2.8
[283]
HepG2.C3A XPA
Mean 4.88
Standard deviation 0.4
Values 5.2 4.6
[284]
HuH.7 XPA
Mean 3.72
Standard deviation 0.4
Values 3.4 3.6 4.2
[285]
SNU475 XPA
Mean 3.29
Standard deviation 0.7
Values 3.8 2.8
[286]
THLE XPA
Mean 4.15
Standard deviation 0.26
Values 4.3 4
[287]
liver XPA
Mean 6.02
Standard deviation 4.3
Values 11 2.7 8.3 2.1
[288]
ref_hepatocyte CUL4B
Mean 6.58
Standard deviation 3.6
Values 10 11 4.5 3.6 3.8
[289]
HepG2 CUL4B
Mean 13.6
Standard deviation 5.6
Values 9.6 18
[290]
HepG2.C3A CUL4B
Mean 31.7
Standard deviation 1.7
Values 30 33
[291]
HuH.7 CUL4B
Mean 84.7
Standard deviation 18
Values 81 1e+02 69
[292]
SNU475 CUL4B
Mean 59.9
Standard deviation 7.1
Values 65 55
[293]
THLE CUL4B
Mean 129
Standard deviation 4.1
Values 1.3e+02 1.3e+02
[294]
liver CUL4B
Mean 17.1
Standard deviation 4.3
Values 14 23 15 17
[295]
ref_hepatocyte MNAT1
Mean 5.52
Standard deviation 3.5
Values 9.2 9.1 1.4 4 3.9
[296]
HepG2 MNAT1
Mean 7.94
Standard deviation 1.1
Values 7.1 8.7
[297]
HepG2.C3A MNAT1
Mean 17.5
Standard deviation 3.6
Values 15 20
[298]
HuH.7 MNAT1
Mean 9.48
Standard deviation 1.5
Values 8.9 8.4 11
[299]
SNU475 MNAT1
Mean 13.2
Standard deviation 1.5
Values 14 12
[300]
THLE MNAT1
Mean 10.8
Standard deviation 0.19
Values 11 11
[301]
liver MNAT1
Mean 4.05
Standard deviation 2
Values 6.8 3 4.3 2.2
[302]
ref_hepatocyte COPS7B
Mean 5.11
Standard deviation 1.8
Values 7.3 3.3 4.4 6.8 3.8
[303]
HepG2 COPS7B
Mean 21.8
Standard deviation 0.68
Values 22 21
[304]
HepG2.C3A COPS7B
Mean 25.6
Standard deviation 1.7
Values 24 27
[305]
HuH.7 COPS7B
Mean 23.3
Standard deviation 7.6
Values 27 15 29
[306]
SNU475 COPS7B
Mean 14.3
Standard deviation 1.5
Values 15 13
[307]
THLE COPS7B
Mean 16.6
Standard deviation 0.46
Values 16 17
[308]
liver COPS7B
Mean 4.67
Standard deviation 2.7
Values 6.5 2.6 7.4 2.1
[309]
ref_hepatocyte GTF2H3
Mean 4.54
Standard deviation 2.1
Values 5.9 4.9 7.1 2.7 2.2
[310]
HepG2 GTF2H3
Mean 23.1
Standard deviation 0.71
Values 23 24
[311]
HepG2.C3A GTF2H3
Mean 27.6
Standard deviation 6.6
Values 23 32
[312]
HuH.7 GTF2H3
Mean 25.7
Standard deviation 6.9
Values 30 18 29
[313]
SNU475 GTF2H3
Mean 21.4
Standard deviation 4.7
Values 25 18
[314]
THLE GTF2H3
Mean 20.6
Standard deviation 3.6
Values 18 23
[315]
liver GTF2H3
Mean 7.05
Standard deviation 2
Values 5.8 9.1 8.4 5
[316]
ref_hepatocyte ERCC2
Mean 4.52
Standard deviation 1.1
Values 4.3 4.5 6.3 3.2 4.3
[317]
HepG2 ERCC2
Mean 21.7
Standard deviation 5
Values 25 18
[318]
HepG2.C3A ERCC2
Mean 20
Standard deviation 5.5
Values 24 16
[319]
HuH.7 ERCC2
Mean 26
Standard deviation 8.3
Values 34 17 27
[320]
SNU475 ERCC2
Mean 20.7
Standard deviation 9.1
Values 27 14
[321]
THLE ERCC2
Mean 21.9
Standard deviation 0.12
Values 22 22
[322]
liver ERCC2
Mean 3.61
Standard deviation 0.8
Values 3 3.3 3.3 4.8
[323]
ref_hepatocyte ISY1
Mean 3.13
Standard deviation 1.9
Values 4.2 5.8 1.3 2.2 2.1
[324]
HepG2 ISY1
Mean 4.67
Standard deviation 0.65
Values 4.2 5.1
[325]
HepG2.C3A ISY1
Mean 4.6
Standard deviation 0.28
Values 4.4 4.8
[326]
HuH.7 ISY1
Mean 3.85
Standard deviation 0.92
Values 3.7 3 4.8
[327]
SNU475 ISY1
Mean 4.57
Standard deviation 0.5
Values 4.9 4.2
[328]
THLE ISY1
Mean 5.96
Standard deviation 0.67
Values 5.5 6.4
[329]
liver ISY1
Mean 2.8
Standard deviation 1.4
Values 3.7 1.5 4.3 1.7
[330]
ref_hepatocyte AQR
Mean 2.82
Standard deviation 1.2
Values 4.3 3.7 2.6 1.4 2.1
[331]
HepG2 AQR
Mean 16
Standard deviation 5.8
Values 12 20
[332]
HepG2.C3A AQR
Mean 17.2
Standard deviation 3.6
Values 15 20
[333]
HuH.7 AQR
Mean 18.1
Standard deviation 4.5
Values 23 15 16
[334]
SNU475 AQR
Mean 23.5
Standard deviation 1.6
Values 25 22
[335]
THLE AQR
Mean 27.1
Standard deviation 2.6
Values 25 29
[336]
liver AQR
Mean 14.9
Standard deviation 6.7
Values 8.6 23 11 17
[337]
ref_hepatocyte GTF2H5
Mean 2.7
Standard deviation 1.8
Values 2.9 1.9 0.76 2.3 5.6
[338]
HepG2 GTF2H5
Mean 18
Standard deviation 4.3
Values 15 21
[339]
HepG2.C3A GTF2H5
Mean 21.3
Standard deviation 10
Values 14 28
[340]
HuH.7 GTF2H5
Mean 18
Standard deviation 4
Values 17 15 22
[341]
SNU475 GTF2H5
Mean 12
Standard deviation 4.1
Values 15 9.1
[342]
THLE GTF2H5
Mean 15.1
Standard deviation 3.1
Values 13 17
[343]
liver GTF2H5
Mean 7.84
Standard deviation 6.2
Values 12 2.9 15 2.3
[344]
ref_hepatocyte EP300
Mean 2.46
Standard deviation 1.2
Values 3 1.8 4.4 1.4 1.8
[345]
HepG2 EP300
Mean 35.9
Standard deviation 5.7
Values 32 40
[346]
HepG2.C3A EP300
Mean 24.1
Standard deviation 1.4
Values 23 25
[347]
HuH.7 EP300
Mean 43
Standard deviation 15
Values 55 48 26
[348]
SNU475 EP300
Mean 26.9
Standard deviation 1.3
Values 28 26
[349]
THLE EP300
Mean 31.2
Standard deviation 11
Values 23 39
[350]
liver EP300
Mean 23.6
Standard deviation 8
Values 20 27 15 33
[351]
ref_hepatocyte ERCC8
Mean 1.95
Standard deviation 0.97
Values 3.2 2.1 2.4 1 0.94
[352]
HepG2 ERCC8
Mean 7.41
Standard deviation 1.8
Values 6.2 8.7
[353]
HepG2.C3A ERCC8
Mean 14.4
Standard deviation 4.1
Values 12 17
[354]
HuH.7 ERCC8
Mean 7.62
Standard deviation 1
Values 8.2 6.5 8.2
[355]
SNU475 ERCC8
Mean 2.69
Standard deviation 0.12
Values 2.8 2.6
[356]
THLE ERCC8
Mean 7.49
Standard deviation 0.44
Values 7.2 7.8
[357]
liver ERCC8
Mean 2.88
Standard deviation 0.48
Values 2.5 3.1 3.5 2.4
[358]
ref_hepatocyte ERCC6
Mean 0.643
Standard deviation 0.5
Values 1.5 0.58 0.18 0.55 0.42
[359]
HepG2 ERCC6
Mean 3.47
Standard deviation 1.4
Values 2.5 4.5
[360]
HepG2.C3A ERCC6
Mean 5.29
Standard deviation 1
Values 4.6 6
[361]
HuH.7 ERCC6
Mean 1.41
Standard deviation 0.39
Values 1.8 1.3 1
[362]
SNU475 ERCC6
Mean 11.7
Standard deviation 3.2
Values 14 9.5
[363]
THLE ERCC6
Mean 6.97
Standard deviation 0.31
Values 6.7 7.2
[364]
liver ERCC6
Mean 8.54
Standard deviation 6.1
Values 3.3 15 3.4 12
[365]
ref_hepatocyte UVSSA
Missing
[366]
HepG2 UVSSA
Mean 3.76
Standard deviation 0.71
Values 3.3 4.3
[367]
HepG2.C3A UVSSA
Mean 4.34
Standard deviation 0.31
Values 4.6 4.1
[368]
HuH.7 UVSSA
Mean 6.94
Standard deviation 1.3
Values 7.8 7.6 5.4
[369]
SNU475 UVSSA
Mean 5.61
Standard deviation 2.2
Values 7.2 4.1
[370]
THLE UVSSA
Mean 2.44
Standard deviation 0.8
Values 1.9 3
[371]
liver UVSSA
Mean 7.08
Standard deviation 5.1
Values 2.1 11 3.2 12