REACTOME_FORMATION_OF_SENESCENCE_ASSOCIATED_HETEROCHROMATIN_FOCI_SAHF Return to index
Order Gene Description ref_hepatocyte HepG2 HepG2.C3A HuH.7 SNU475 THLE liver
1 HMGA1 High mobility group protein HMG-I/HMG-Y [1] -0.48[2] -1.23[3] -0.67[4] -0.97[5] -0.40[6] -3.87[7]
2 CDKN1A Cyclin-dependent kinase inhibitor 1 [8] -0.38[9] -1.46[10] -4.07[11] -2.18[12] -0.21[13] -0.84[14]
3 LMNB1 Lamin-B1 [15] -0.23[16] 0.11[17] 0.24[18] 1.12[19] 0.18[20] -1.21[21]
4 HIRA Protein HIRA [22] 0.30[23] 1.03[24] 1.07[25] 0.30[26] 0.11[27] 1.75[28]
5 TP53 Cellular tumor antigen p53 [29] 0.42[30] 0.29[31] 1.13[32] 1.10[33] 0.18[34] 0.96[35]
6 ASF1A Histone chaperone ASF1A [36] -0.37[37] 0.61[38] -0.49[39] 1.04[40] 0.04[41] 1.03[42]
7 UBN1 Ubinuclein-1 [43] 0.09[44] 0.09[45] 0.53[46] 1.01[47] 0.44[48] 2.20[49]
8 RB1 Retinoblastoma-associated protein [50] 0.00[51] 0.81[52] 1.45[53] 2.08[54] 1.82[55] 2.47[56]
9 CABIN1 Calcineurin-binding protein cabin-1 [57] 2.62[58] 2.33[59] 2.34[60] 2.36[61] 1.54[62] 3.67[63]
10 HMGA2 High mobility group protein HMGI-C [64] 3.26[65] 4.77[66] 4.31[67] 3.12[68] 1.51[69] -5.42[70]
11 EP400 E1A-binding protein p400 [71] 2.31[72] 2.34[73] 2.67[74] 3.19[75] 2.30[76] 3.80[77]
12 H1-4 [78] [79] [80] [81] [82] [83] [84]
13 H1-5 [85] [86] [87] [88] [89] [90] [91]
14 H1-3 [92] [93] [94] [95] [96] [97] [98]
15 H1-2 [99] [100] [101] [102] [103] [104] [105]
16 H1-0 [106] [107] [108] [109] [110] [111] [112]
17 H1-1 [113] [114] [115] [116] [117] [118] [119]
[1]
ref_hepatocyte HMGA1
Mean 79
Standard deviation 95
Values 27 1.3e+02 2.3e+02 6.2 10
[2]
HepG2 HMGA1
Mean 291
Standard deviation 1.5e+02
Values 3.9e+02 1.9e+02
[3]
HepG2.C3A HMGA1
Mean 124
Standard deviation 23
Values 1.1e+02 1.4e+02
[4]
HuH.7 HMGA1
Mean 167
Standard deviation 39
Values 2e+02 1.2e+02 1.8e+02
[5]
SNU475 HMGA1
Mean 84.9
Standard deviation 63
Values 41 1.3e+02
[6]
THLE HMGA1
Mean 212
Standard deviation 88
Values 1.5e+02 2.7e+02
[7]
liver HMGA1
Mean 3.84
Standard deviation 3.2
Values 7.1 0.86 6 1.4
[8]
ref_hepatocyte CDKN1A
Mean 40.1
Standard deviation 28
Values 19 48 76 52 5.7
[9]
HepG2 CDKN1A
Mean 158
Standard deviation 49
Values 1.9e+02 1.2e+02
[10]
HepG2.C3A CDKN1A
Mean 53.9
Standard deviation 3.9
Values 51 57
[11]
HuH.7 CDKN1A
Mean 8
Standard deviation 1.9
Values 6.5 10 7.3
[12]
SNU475 CDKN1A
Mean 18.6
Standard deviation 7.8
Values 13 24
[13]
THLE CDKN1A
Mean 122
Standard deviation 11
Values 1.3e+02 1.1e+02
[14]
liver CDKN1A
Mean 16
Standard deviation 8.1
Values 16 6.2 26 16
[15]
ref_hepatocyte LMNB1
Mean 7.95
Standard deviation 9.7
Values 25 7.4 2.1 2.1 3.3
[16]
HepG2 LMNB1
Mean 34.6
Standard deviation 12
Values 26 43
[17]
HepG2.C3A LMNB1
Mean 31.6
Standard deviation 15
Values 21 42
[18]
HuH.7 LMNB1
Mean 31.5
Standard deviation 13
Values 36 16 42
[19]
SNU475 LMNB1
Mean 36.2
Standard deviation 1.2
Values 37 35
[20]
THLE LMNB1
Mean 31.8
Standard deviation 13
Values 22 41
[21]
liver LMNB1
Mean 2.45
Standard deviation 2.4
Values 0.54 5.6 0.69 3
[22]
ref_hepatocyte HIRA
Mean 5.63
Standard deviation 2.9
Values 11 3.8 5.2 4.8 3.6
[23]
HepG2 HIRA
Mean 35.4
Standard deviation 0.09
Values 35 35
[24]
HepG2.C3A HIRA
Mean 42.4
Standard deviation 3.9
Values 45 40
[25]
HuH.7 HIRA
Mean 39.7
Standard deviation 12
Values 48 26 46
[26]
SNU475 HIRA
Mean 14.6
Standard deviation 0.36
Values 15 14
[27]
THLE HIRA
Mean 21.5
Standard deviation 4
Values 19 24
[28]
liver HIRA
Mean 13.5
Standard deviation 10
Values 6.3 22 3.5 22
[29]
ref_hepatocyte TP53
Mean 5.28
Standard deviation 0.94
Values 5.5 3.7 6.2 5.5 5.5
[30]
HepG2 TP53
Mean 36.3
Standard deviation 0.12
Values 36 36
[31]
HepG2.C3A TP53
Mean 23.9
Standard deviation 1.8
Values 23 25
[32]
HuH.7 TP53
Mean 38.7
Standard deviation 16
Values 50 20 46
[33]
SNU475 TP53
Mean 23.7
Standard deviation 6.7
Values 28 19
[34]
THLE TP53
Mean 21.1
Standard deviation 6.6
Values 16 26
[35]
liver TP53
Mean 7.29
Standard deviation 2.3
Values 9 5 9.5 5.6
[36]
ref_hepatocyte ASF1A
Mean 5.04
Standard deviation 3.1
Values 9.7 6.2 1.6 3.2 4.6
[37]
HepG2 ASF1A
Mean 19.9
Standard deviation 2.9
Values 18 22
[38]
HepG2.C3A ASF1A
Mean 28.2
Standard deviation 14
Values 18 38
[39]
HuH.7 ASF1A
Mean 12.1
Standard deviation 3.7
Values 13 8.1 15
[40]
SNU475 ASF1A
Mean 21.8
Standard deviation 1.3
Values 21 23
[41]
THLE ASF1A
Mean 18.3
Standard deviation 0.45
Values 19 18
[42]
liver ASF1A
Mean 7.34
Standard deviation 4
Values 7.2 6.1 13 3.3
[43]
ref_hepatocyte UBN1
Mean 4.78
Standard deviation 3.1
Values 9.4 6.2 4.2 2.4 1.6
[44]
HepG2 UBN1
Mean 26.1
Standard deviation 1.5
Values 25 27
[45]
HepG2.C3A UBN1
Mean 18.7
Standard deviation 0.62
Values 18 19
[46]
HuH.7 UBN1
Mean 23.3
Standard deviation 4.6
Values 28 22 19
[47]
SNU475 UBN1
Mean 20.2
Standard deviation 0.3
Values 20 20
[48]
THLE UBN1
Mean 22.9
Standard deviation 6.3
Values 19 27
[49]
liver UBN1
Mean 15.6
Standard deviation 3.9
Values 15 16 11 21
[50]
ref_hepatocyte RB1
Mean 3.07
Standard deviation 1.4
Values 5 3.8 3 1.4 2.2
[51]
HepG2 RB1
Mean 15.8
Standard deviation 7.9
Values 10 21
[52]
HepG2.C3A RB1
Mean 19.9
Standard deviation 6.1
Values 16 24
[53]
HuH.7 RB1
Mean 28.2
Standard deviation 3.3
Values 32 25 28
[54]
SNU475 RB1
Mean 27.3
Standard deviation 0.91
Values 28 27
[55]
THLE RB1
Mean 38.3
Standard deviation 1.7
Values 37 40
[56]
liver RB1
Mean 12.1
Standard deviation 2.2
Values 12 14 13 9
[57]
ref_hepatocyte CABIN1
Mean 1.97
Standard deviation 1.5
Values 4.6 0.76 1.6 1.8 1.1
[58]
HepG2 CABIN1
Mean 62.1
Standard deviation 23
Values 46 78
[59]
HepG2.C3A CABIN1
Mean 36.5
Standard deviation 0.53
Values 37 36
[60]
HuH.7 CABIN1
Mean 33.6
Standard deviation 9.1
Values 44 28 29
[61]
SNU475 CABIN1
Mean 21.2
Standard deviation 3.2
Values 23 19
[62]
THLE CABIN1
Mean 20.2
Standard deviation 3.9
Values 17 23
[63]
liver CABIN1
Mean 17.8
Standard deviation 12
Values 6.7 30 8.2 26
[64]
ref_hepatocyte HMGA2
Mean 1.66
Standard deviation 3.3
Values 7.6 0.085 0.35 0.026 0.19
[65]
HepG2 HMGA2
Mean 81.5
Standard deviation 21
Values 66 97
[66]
HepG2.C3A HMGA2
Mean 167
Standard deviation 54
Values 1.3e+02 2.1e+02
[67]
HuH.7 HMGA2
Mean 110
Standard deviation 38
Values 1.5e+02 73 1.1e+02
[68]
SNU475 HMGA2
Mean 30.3
Standard deviation 9
Values 24 37
[69]
THLE HMGA2
Mean 16.6
Standard deviation 6.6
Values 12 21
[70]
liver HMGA2
Mean 0.0276
Standard deviation 0.031
Values 0 0.071 0.026 0.013
[71]
ref_hepatocyte EP400
Mean 1.51
Standard deviation 0.82
Values 2.3 1.3 2.5 0.82 0.71
[72]
HepG2 EP400
Mean 38.4
Standard deviation 2.9
Values 41 36
[73]
HepG2.C3A EP400
Mean 28.2
Standard deviation 5.6
Values 32 24
[74]
HuH.7 EP400
Mean 32.4
Standard deviation 10
Values 44 27 26
[75]
SNU475 EP400
Mean 29
Standard deviation 3.1
Values 31 27
[76]
THLE EP400
Mean 26.3
Standard deviation 6.9
Values 21 31
[77]
liver EP400
Mean 15
Standard deviation 6.2
Values 10 20 8.9 21
[78]
ref_hepatocyte H1-4
Missing
[79]
HepG2 H1-4
Missing
[80]
HepG2.C3A H1-4
Missing
[81]
HuH.7 H1-4
Missing
[82]
SNU475 H1-4
Missing
[83]
THLE H1-4
Missing
[84]
liver H1-4
Missing
[85]
ref_hepatocyte H1-5
Missing
[86]
HepG2 H1-5
Missing
[87]
HepG2.C3A H1-5
Missing
[88]
HuH.7 H1-5
Missing
[89]
SNU475 H1-5
Missing
[90]
THLE H1-5
Missing
[91]
liver H1-5
Missing
[92]
ref_hepatocyte H1-3
Missing
[93]
HepG2 H1-3
Missing
[94]
HepG2.C3A H1-3
Missing
[95]
HuH.7 H1-3
Missing
[96]
SNU475 H1-3
Missing
[97]
THLE H1-3
Missing
[98]
liver H1-3
Missing
[99]
ref_hepatocyte H1-2
Missing
[100]
HepG2 H1-2
Missing
[101]
HepG2.C3A H1-2
Missing
[102]
HuH.7 H1-2
Missing
[103]
SNU475 H1-2
Missing
[104]
THLE H1-2
Missing
[105]
liver H1-2
Missing
[106]
ref_hepatocyte H1-0
Missing
[107]
HepG2 H1-0
Missing
[108]
HepG2.C3A H1-0
Missing
[109]
HuH.7 H1-0
Missing
[110]
SNU475 H1-0
Missing
[111]
THLE H1-0
Missing
[112]
liver H1-0
Missing
[113]
ref_hepatocyte H1-1
Missing
[114]
HepG2 H1-1
Missing
[115]
HepG2.C3A H1-1
Missing
[116]
HuH.7 H1-1
Missing
[117]
SNU475 H1-1
Missing
[118]
THLE H1-1
Missing
[119]
liver H1-1
Missing