REACTOME_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[1] |
-2.63[2] |
-2.67[3] |
-3.02[4] |
-2.26[5] |
-2.42[6] |
-1.02[7] |
2 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[8] |
-3.33[9] |
-3.07[10] |
-2.90[11] |
-3.48[12] |
-3.26[13] |
-2.76[14] |
3 |
SSRP1 |
FACT complex subunit SSRP1 |
[15] |
0.49[16] |
0.03[17] |
0.22[18] |
0.12[19] |
0.52[20] |
-1.22[21] |
4 |
PAF1 |
RNA polymerase II-associated factor 1 homolog |
[22] |
-1.62[23] |
-1.78[24] |
-1.22[25] |
-1.37[26] |
-1.50[27] |
-1.33[28] |
5 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[29] |
0.45[30] |
0.37[31] |
0.35[32] |
-0.62[33] |
0.14[34] |
0.80[35] |
6 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[36] |
-1.73[37] |
-1.14[38] |
-1.27[39] |
-2.73[40] |
-2.14[41] |
-1.63[42] |
7 |
TCEA1 |
Transcription elongation factor A protein 1 |
[43] |
0.18[44] |
0.71[45] |
0.03[46] |
0.79[47] |
0.52[48] |
0.60[49] |
8 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[50] |
-1.42[51] |
-1.22[52] |
-2.15[53] |
-2.66[54] |
-2.02[55] |
-0.75[56] |
9 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[57] |
-1.74[58] |
-0.93[59] |
-1.14[60] |
-1.01[61] |
-1.21[62] |
-0.95[63] |
10 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[64] |
-1.32[65] |
-1.07[66] |
-1.69[67] |
-1.21[68] |
-1.44[69] |
-1.50[70] |
11 |
SUPT5H |
Transcription elongation factor SPT5 |
[71] |
0.13[72] |
-0.21[73] |
0.64[74] |
0.38[75] |
0.11[76] |
-0.02[77] |
12 |
GTF2F2 |
General transcription factor IIF subunit 2 |
[78] |
-2.10[79] |
-1.50[80] |
-1.29[81] |
-2.18[82] |
-2.05[83] |
-2.26[84] |
13 |
SUPT4H1 |
Transcription elongation factor SPT4 |
[85] |
-0.40[86] |
-0.35[87] |
-0.87[88] |
-1.70[89] |
-1.21[90] |
-1.50[91] |
14 |
NCBP2 |
Nuclear cap-binding protein subunit 2 |
[92] |
-0.62[93] |
-0.19[94] |
-0.22[95] |
-0.93[96] |
-0.77[97] |
-1.01[98] |
15 |
WDR61 |
WD repeat-containing protein 61 |
[99] |
-1.19[100] |
-1.21[101] |
-1.21[102] |
-1.50[103] |
-1.52[104] |
-0.62[105] |
16 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[106] |
0.66[107] |
0.74[108] |
0.12[109] |
-0.30[110] |
-0.17[111] |
-0.13[112] |
17 |
SUPT16H |
FACT complex subunit SPT16 |
[113] |
1.45[114] |
0.71[115] |
1.36[116] |
1.42[117] |
1.52[118] |
0.27[119] |
18 |
CCNH |
Cyclin-H |
[120] |
-1.83[121] |
-1.00[122] |
-1.72[123] |
-1.84[124] |
-0.55[125] |
-0.60[126] |
19 |
IWS1 |
Protein IWS1 homolog |
[127] |
-0.50[128] |
-0.11[129] |
-0.37[130] |
-0.09[131] |
-0.35[132] |
-0.10[133] |
20 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[134] |
-1.74[135] |
-1.65[136] |
-1.84[137] |
-2.33[138] |
-2.35[139] |
-0.71[140] |
21 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[141] |
-0.27[142] |
-0.05[143] |
-0.75[144] |
-0.51[145] |
-0.16[146] |
-0.38[147] |
22 |
GTF2F1 |
General transcription factor IIF subunit 1 |
[148] |
0.23[149] |
-0.21[150] |
1.15[151] |
-0.45[152] |
-0.04[153] |
-0.95[154] |
23 |
CDK9 |
Cyclin-dependent kinase 9 |
[155] |
-0.53[156] |
-0.93[157] |
-0.96[158] |
-0.21[159] |
-0.61[160] |
0.47[161] |
24 |
CDK7 |
Cyclin-dependent kinase 7 |
[162] |
-0.80[163] |
0.18[164] |
-0.21[165] |
-0.63[166] |
-1.05[167] |
-2.03[168] |
25 |
SUPT6H |
Transcription elongation factor SPT6 |
[169] |
1.51[170] |
0.83[171] |
1.34[172] |
1.48[173] |
1.27[174] |
1.65[175] |
26 |
LEO1 |
RNA polymerase-associated protein LEO1 |
[176] |
-1.13[177] |
0.29[178] |
0.57[179] |
-0.63[180] |
-0.82[181] |
-0.13[182] |
27 |
CCNK |
Cyclin-K |
[183] |
0.00[184] |
-1.00[185] |
-0.92[186] |
0.34[187] |
-0.26[188] |
-1.73[189] |
28 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[190] |
1.06[191] |
1.41[192] |
1.24[193] |
1.05[194] |
1.65[195] |
1.27[196] |
29 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[197] |
-5.56[198] |
-4.65[199] |
-4.97[200] |
-5.24[201] |
-6.59[202] |
-4.35[203] |
30 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[204] |
0.10[205] |
0.19[206] |
-0.62[207] |
-0.47[208] |
-0.34[209] |
-0.11[210] |
31 |
EAF1 |
ELL-associated factor 1 |
[211] |
-0.36[212] |
-0.69[213] |
0.88[214] |
-0.92[215] |
-0.38[216] |
0.22[217] |
32 |
CTR9 |
RNA polymerase-associated protein CTR9 homolog |
[218] |
-0.13[219] |
0.28[220] |
0.67[221] |
1.15[222] |
-0.18[223] |
1.42[224] |
33 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[225] |
0.07[226] |
0.21[227] |
0.05[228] |
0.53[229] |
-0.01[230] |
0.48[231] |
34 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[232] |
2.57[233] |
1.08[234] |
1.96[235] |
2.10[236] |
2.39[237] |
2.12[238] |
35 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[239] |
-0.41[240] |
0.03[241] |
0.01[242] |
0.26[243] |
-0.62[244] |
-1.34[245] |
36 |
RTF1 |
RNA polymerase-associated protein RTF1 homolog |
[246] |
0.29[247] |
0.30[248] |
0.27[249] |
1.37[250] |
1.24[251] |
0.83[252] |
37 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[253] |
-0.78[254] |
0.50[255] |
-0.43[256] |
0.32[257] |
-0.23[258] |
-0.63[259] |
38 |
AFF4 |
AF4/FMR2 family member 4 |
[260] |
1.57[261] |
1.83[262] |
1.39[263] |
2.81[264] |
2.80[265] |
3.32[266] |
39 |
NCBP1 |
Nuclear cap-binding protein subunit 1 |
[267] |
1.10[268] |
1.28[269] |
0.99[270] |
1.70[271] |
2.14[272] |
1.56[273] |
40 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[274] |
1.05[275] |
1.44[276] |
1.29[277] |
1.30[278] |
0.98[279] |
0.45[280] |
41 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[281] |
0.96[282] |
0.98[283] |
1.31[284] |
1.26[285] |
1.08[286] |
-0.51[287] |
42 |
MLLT1 |
Protein ENL |
[288] |
1.98[289] |
0.85[290] |
0.77[291] |
1.08[292] |
2.67[293] |
0.34[294] |
43 |
CDC73 |
Parafibromin |
[295] |
0.91[296] |
1.67[297] |
1.88[298] |
2.98[299] |
1.84[300] |
1.88[301] |
44 |
CTDP1 |
RNA polymerase II subunit A C-terminal domain phosphatase |
[302] |
1.18[303] |
0.39[304] |
0.28[305] |
0.37[306] |
0.49[307] |
0.64[308] |
45 |
CCNT1 |
Cyclin-T1 |
[309] |
0.88[310] |
1.79[311] |
1.64[312] |
1.85[313] |
1.72[314] |
1.94[315] |
46 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[316] |
1.44[317] |
1.81[318] |
1.52[319] |
1.21[320] |
1.28[321] |
1.35[322] |
47 |
ELL |
RNA polymerase II elongation factor ELL |
[323] |
0.73[324] |
0.86[325] |
0.97[326] |
0.10[327] |
0.83[328] |
0.80[329] |
48 |
EAF2 |
ELL-associated factor 2 |
[330] |
-1.69[331] |
-1.24[332] |
-1.56[333] |
-1.94[334] |
-3.54[335] |
-1.13[336] |
49 |
CCNT2 |
Cyclin-T2 |
[337] |
1.11[338] |
2.92[339] |
2.29[340] |
2.39[341] |
1.89[342] |
3.22[343] |
50 |
MLLT3 |
Protein AF-9 |
[344] |
1.11[345] |
1.40[346] |
2.58[347] |
2.01[348] |
1.36[349] |
0.34[350] |
51 |
ENSG00000288631 |
[351] |
[352] |
[353] |
[354] |
[355] |
[356] |
[357] |
52 |
NELFCD |
Negative elongation factor C/D |
[358] |
[359] |
[360] |
[361] |
[362] |
[363] |
[364] |
53 |
NELFA |
Negative elongation factor A |
[365] |
[366] |
[367] |
[368] |
[369] |
[370] |
[371] |
54 |
NELFE |
Negative elongation factor E |
[372] |
[373] |
[374] |
[375] |
[376] |
[377] |
[378] |
55 |
ELOA |
Elongin-A |
[379] |
[380] |
[381] |
[382] |
[383] |
[384] |
[385] |
56 |
NELFB |
Negative elongation factor B |
[386] |
[387] |
[388] |
[389] |
[390] |
[391] |
[392] |
57 |
ELOA2 |
Elongin-A2 |
[393] |
[394] |
[395] |
[396] |
[397] |
[398] |
[399] |
58 |
ENSG00000288607 |
[400] |
[401] |
[402] |
[403] |
[404] |
[405] |
[406] |
59 |
ELOB |
Elongin-B |
[407] |
[408] |
[409] |
[410] |
[411] |
[412] |
[413] |
60 |
ELOC |
Elongin-C |
[414] |
[415] |
[416] |
[417] |
[418] |
[419] |
[420] |
61 |
ENSG00000288616 |
[421] |
[422] |
[423] |
[424] |
[425] |
[426] |
[427] |
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