REACTOME_DUAL_INCISION_IN_TC_NER |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
UBB |
Polyubiquitin-B |
[1] |
-0.98[2] |
-1.23[3] |
-1.29[4] |
-1.36[5] |
-1.10[6] |
-0.38[7] |
2 |
RPS27A |
Ubiquitin-40S ribosomal protein S27a |
[8] |
[9] |
[10] |
[11] |
[12] |
[13] |
[14] |
3 |
UBC |
Polyubiquitin-C |
[15] |
-0.54[16] |
-0.48[17] |
-0.93[18] |
-0.50[19] |
-0.72[20] |
0.07[21] |
4 |
HMGN1 |
Non-histone chromosomal protein HMG-14 |
[22] |
-1.44[23] |
-1.45[24] |
-1.80[25] |
-1.37[26] |
-1.42[27] |
-2.49[28] |
5 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[29] |
-1.26[30] |
-1.32[31] |
-1.76[32] |
-0.77[33] |
-1.03[34] |
0.16[35] |
6 |
UBA52 |
Ubiquitin-60S ribosomal protein L40 |
[36] |
1.90[37] |
1.75[38] |
2.58[39] |
0.89[40] |
1.51[41] |
0.84[42] |
7 |
RBX1 |
E3 ubiquitin-protein ligase RBX1 |
[43] |
-0.84[44] |
-0.46[45] |
-0.79[46] |
-1.28[47] |
-1.05[48] |
-0.60[49] |
8 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[50] |
-1.95[51] |
-1.72[52] |
-1.64[53] |
-2.00[54] |
-1.87[55] |
-1.59[56] |
9 |
PCNA |
Proliferating cell nuclear antigen |
[57] |
2.10[58] |
2.04[59] |
0.42[60] |
1.21[61] |
1.29[62] |
-1.57[63] |
10 |
POLD2 |
DNA polymerase delta subunit 2 |
[64] |
0.62[65] |
0.74[66] |
1.04[67] |
0.56[68] |
0.73[69] |
1.38[70] |
11 |
POLD4 |
DNA polymerase delta subunit 4 |
[71] |
-0.91[72] |
-1.31[73] |
0.56[74] |
2.87[75] |
-0.92[76] |
1.02[77] |
12 |
PRPF19 |
Pre-mRNA-processing factor 19 |
[78] |
1.49[79] |
0.99[80] |
2.29[81] |
0.88[82] |
1.05[83] |
-0.16[84] |
13 |
DDB1 |
DNA damage-binding protein 1 |
[85] |
2.83[86] |
2.14[87] |
3.07[88] |
2.26[89] |
2.10[90] |
2.10[91] |
14 |
POLE3 |
DNA polymerase epsilon subunit 3 |
[92] |
0.43[93] |
0.24[94] |
0.32[95] |
0.37[96] |
1.20[97] |
-0.07[98] |
15 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[99] |
1.82[100] |
1.73[101] |
1.60[102] |
0.86[103] |
1.52[104] |
1.98[105] |
16 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[106] |
-0.36[107] |
0.22[108] |
-0.02[109] |
-1.25[110] |
-0.76[111] |
-0.46[112] |
17 |
POLE4 |
DNA polymerase epsilon subunit 4 |
[113] |
0.17[114] |
0.86[115] |
-2.81[116] |
-0.21[117] |
-0.87[118] |
-0.31[119] |
18 |
TCEA1 |
Transcription elongation factor A protein 1 |
[120] |
1.55[121] |
2.06[122] |
1.28[123] |
2.27[124] |
1.90[125] |
1.78[126] |
19 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[127] |
-0.05[128] |
0.14[129] |
-0.89[130] |
-1.18[131] |
-0.64[132] |
0.43[133] |
20 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[134] |
-0.37[135] |
0.43[136] |
0.11[137] |
0.47[138] |
0.18[139] |
0.22[140] |
21 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[141] |
0.05[142] |
0.29[143] |
-0.43[144] |
0.27[145] |
-0.06[146] |
-0.33[147] |
22 |
RPA2 |
Replication protein A 32 kDa subunit |
[148] |
-0.24[149] |
-0.22[150] |
0.13[151] |
0.68[152] |
0.56[153] |
-0.90[154] |
23 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[155] |
2.04[156] |
2.10[157] |
1.38[158] |
1.18[159] |
1.22[160] |
1.05[161] |
24 |
CUL4A |
Cullin-4A |
[162] |
1.45[163] |
1.68[164] |
0.77[165] |
1.35[166] |
0.96[167] |
2.08[168] |
25 |
CCNH |
Cyclin-H |
[169] |
-0.45[170] |
0.36[171] |
-0.47[172] |
-0.36[173] |
0.84[174] |
0.57[175] |
26 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[176] |
-0.37[177] |
-0.29[178] |
-0.59[179] |
-0.85[180] |
-0.96[181] |
0.47[182] |
27 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[183] |
1.10[184] |
1.31[185] |
0.50[186] |
0.97[187] |
1.23[188] |
0.80[189] |
28 |
USP7 |
Ubiquitin carboxyl-terminal hydrolase 7 |
[190] |
2.78[191] |
2.53[192] |
1.70[193] |
1.52[194] |
1.70[195] |
2.03[196] |
29 |
ERCC1 |
DNA excision repair protein ERCC-1 |
[197] |
0.73[198] |
0.53[199] |
0.48[200] |
0.77[201] |
0.99[202] |
0.44[203] |
30 |
CDK7 |
Cyclin-dependent kinase 7 |
[204] |
0.57[205] |
1.54[206] |
1.04[207] |
0.86[208] |
0.34[209] |
-0.85[210] |
31 |
PPIE |
Peptidyl-prolyl cis-trans isomerase E |
[211] |
0.14[212] |
-0.12[213] |
-0.04[214] |
1.34[215] |
1.37[216] |
0.62[217] |
32 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[218] |
2.43[219] |
2.77[220] |
2.49[221] |
2.53[222] |
3.03[223] |
2.45[224] |
33 |
RFC4 |
Replication factor C subunit 4 |
[225] |
0.25[226] |
0.83[227] |
1.19[228] |
0.45[229] |
1.59[230] |
-1.25[231] |
34 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[232] |
-4.19[233] |
-3.29[234] |
-3.71[235] |
-3.76[236] |
-5.21[237] |
-3.17[238] |
35 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[239] |
1.47[240] |
1.55[241] |
0.63[242] |
1.02[243] |
1.05[244] |
1.06[245] |
36 |
RFC1 |
Replication factor C subunit 1 |
[246] |
1.36[247] |
2.60[248] |
2.77[249] |
1.74[250] |
2.39[251] |
2.28[252] |
37 |
XAB2 |
Pre-mRNA-splicing factor SYF1 |
[253] |
1.27[254] |
1.16[255] |
1.91[256] |
1.00[257] |
1.28[258] |
0.64[259] |
38 |
RFC2 |
Replication factor C subunit 2 |
[260] |
0.95[261] |
0.76[262] |
0.59[263] |
1.60[264] |
1.86[265] |
0.72[266] |
39 |
RPA1 |
Replication protein A 70 kDa DNA-binding subunit |
[267] |
2.53[268] |
2.22[269] |
2.28[270] |
3.27[271] |
3.09[272] |
1.50[273] |
40 |
RPA3 |
Replication protein A 14 kDa subunit |
[274] |
0.85[275] |
1.60[276] |
2.11[277] |
0.52[278] |
0.60[279] |
0.81[280] |
41 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[281] |
1.44[282] |
1.57[283] |
1.30[284] |
2.01[285] |
1.37[286] |
1.66[287] |
42 |
ZNF830 |
Zinc finger protein 830 |
[288] |
-0.45[289] |
-0.13[290] |
0.61[291] |
-0.41[292] |
-0.26[293] |
0.04[294] |
43 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[295] |
3.95[296] |
2.44[297] |
3.22[298] |
3.58[299] |
3.77[300] |
3.29[301] |
44 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[302] |
0.97[303] |
1.39[304] |
1.27[305] |
1.74[306] |
0.77[307] |
-0.17[308] |
45 |
XPA |
DNA repair protein complementing XP-A cells |
[309] |
-1.12[310] |
-0.29[311] |
-0.83[312] |
-0.50[313] |
-0.53[314] |
0.81[315] |
46 |
CUL4B |
Cullin-4B |
[316] |
1.12[317] |
2.46[318] |
3.72[319] |
3.73[320] |
4.47[321] |
2.37[322] |
47 |
RFC5 |
Replication factor C subunit 5 |
[323] |
1.34[324] |
1.76[325] |
1.74[326] |
1.69[327] |
2.02[328] |
0.62[329] |
48 |
ERCC5 |
DNA repair protein complementing XP-G cells |
[330] |
-3.56[331] |
-2.81[332] |
-3.04[333] |
-2.32[334] |
-2.71[335] |
-0.74[336] |
49 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[337] |
0.60[338] |
1.86[339] |
0.82[340] |
1.81[341] |
1.15[342] |
0.55[343] |
50 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[344] |
2.42[345] |
2.80[346] |
2.54[347] |
2.78[348] |
2.36[349] |
1.63[350] |
51 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[351] |
2.33[352] |
2.34[353] |
2.56[354] |
2.74[355] |
2.46[356] |
0.67[357] |
52 |
RFC3 |
Replication factor C subunit 3 |
[358] |
2.39[359] |
3.21[360] |
3.13[361] |
2.67[362] |
3.07[363] |
0.63[364] |
53 |
ISY1 |
Pre-mRNA-splicing factor ISY1 homolog |
[365] |
0.65[366] |
0.75[367] |
0.34[368] |
1.09[369] |
1.11[370] |
0.83[371] |
54 |
AQR |
Intron-binding protein aquarius |
[372] |
2.58[373] |
2.80[374] |
2.72[375] |
3.60[376] |
3.45[377] |
3.39[378] |
55 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[379] |
2.81[380] |
3.17[381] |
2.78[382] |
2.70[383] |
2.67[384] |
2.53[385] |
56 |
EP300 |
Histone acetyltransferase p300 |
[386] |
3.94[387] |
3.48[388] |
4.16[389] |
4.00[390] |
3.85[391] |
4.25[392] |
57 |
POLD1 |
DNA polymerase delta catalytic subunit |
[393] |
3.07[394] |
3.25[395] |
3.86[396] |
3.25[397] |
3.81[398] |
2.17[399] |
58 |
POLK |
DNA polymerase kappa |
[400] |
0.37[401] |
1.80[402] |
1.84[403] |
3.25[404] |
2.79[405] |
3.59[406] |
59 |
ERCC8 |
DNA excision repair protein ERCC-8 |
[407] |
1.99[408] |
3.07[409] |
2.00[410] |
1.01[411] |
2.12[412] |
1.55[413] |
60 |
POLD3 |
DNA polymerase delta subunit 3 |
[414] |
2.39[415] |
2.21[416] |
2.97[417] |
3.54[418] |
3.83[419] |
2.48[420] |
61 |
POLE |
DNA polymerase epsilon catalytic subunit A |
[421] |
4.26[422] |
4.83[423] |
4.67[424] |
4.16[425] |
4.97[426] |
4.43[427] |
62 |
POLE2 |
DNA polymerase epsilon subunit 2 |
[428] |
1.92[429] |
2.67[430] |
3.44[431] |
2.58[432] |
2.92[433] |
0.34[434] |
63 |
ERCC4 |
DNA repair endonuclease XPF |
[435] |
3.43[436] |
3.07[437] |
3.02[438] |
3.65[439] |
3.60[440] |
3.91[441] |
64 |
ERCC6 |
DNA excision repair protein ERCC-6 |
[442] |
2.51[443] |
3.23[444] |
1.17[445] |
4.74[446] |
3.62[447] |
4.72[448] |
65 |
UVSSA |
UV-stimulated scaffold protein A |
[449] |
[450] |
[451] |
[452] |
[453] |
[454] |
[455] |
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