REACTOME_COLLAGEN_FORMATION | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | P4HB | Protein disulfide-isomerase | [1] | 0.00[2] | 0.07[3] | -0.42[4] | -2.09[5] | -1.66[6] | 0.34[7] |
2 | PPIB | Peptidyl-prolyl cis-trans isomerase B | [8] | -2.92[9] | -2.46[10] | -2.62[11] | -4.10[12] | -4.26[13] | -2.79[14] |
3 | CTSB | Cathepsin B | [15] | 0.49[16] | 0.15[17] | -0.71[18] | -1.94[19] | -0.79[20] | -0.21[21] |
4 | PLOD2 | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 | [22] | -1.39[23] | -0.82[24] | -0.79[25] | -1.84[26] | -0.99[27] | -2.94[28] |
5 | CD151 | CD151 antigen | [29] | -0.18[30] | -0.56[31] | -1.09[32] | -0.10[33] | -0.69[34] | -1.03[35] |
6 | COL18A1 | Collagen alpha-1(XVIII) chain | [36] | 0.48[37] | -0.01[38] | 0.42[39] | -0.10[40] | -3.50[41] | 1.00[42] |
7 | LAMC2 | Laminin subunit gamma-2 | [43] | -8.36[44] | -9.35[45] | -7.89[46] | -5.49[47] | -4.04[48] | -6.53[49] |
8 | LAMB3 | Laminin subunit beta-3 | [50] | -2.84[51] | -5.46[52] | -3.82[53] | -1.18[54] | -1.84[55] | -2.58[56] |
9 | PLOD1 | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 | [57] | 2.42[58] | 3.16[59] | 2.15[60] | 0.51[61] | 1.31[62] | 0.46[63] |
10 | ITGA6 | Integrin alpha-6 | [64] | 0.31[65] | 0.94[66] | 1.22[67] | -1.67[68] | -2.99[69] | -0.73[70] |
11 | PLOD3 | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 | [71] | 0.97[72] | 0.53[73] | 0.77[74] | -0.57[75] | 0.32[76] | -0.18[77] |
12 | P4HA1 | Prolyl 4-hydroxylase subunit alpha-1 | [78] | 1.91[79] | 2.72[80] | 2.11[81] | 1.20[82] | 1.12[83] | 0.64[84] |
13 | SERPINH1 | Serpin H1 | [85] | 2.07[86] | 1.91[87] | 1.31[88] | 3.10[89] | 2.68[90] | -0.58[91] |
14 | P4HA2 | Prolyl 4-hydroxylase subunit alpha-2 | [92] | 1.40[93] | 0.62[94] | 0.13[95] | 0.87[96] | 1.65[97] | -1.71[98] |
15 | MMP3 | Stromelysin-1 | [99] | -4.55[100] | -9.23[101] | -11.41[102] | -2.27[103] | -5.01[104] | -8.53[105] |
16 | CTSS | Cathepsin S | [106] | -2.58[107] | -1.69[108] | -3.82[109] | -1.44[110] | -3.97[111] | 0.46[112] |
17 | PCOLCE | Procollagen C-endopeptidase enhancer 1 | [113] | -2.10[114] | -2.14[115] | -2.28[116] | -1.93[117] | -2.13[118] | -0.98[119] |
18 | COL9A3 | Collagen alpha-3(IX) chain | [120] | 2.78[121] | 2.01[122] | -1.88[123] | -4.28[124] | -5.87[125] | -5.35[126] |
19 | CRTAP | Cartilage-associated protein | [127] | 1.24[128] | 1.18[129] | 3.62[130] | 2.13[131] | 2.42[132] | 0.74[133] |
20 | DST | Dystonin | [134] | 1.50[135] | 2.61[136] | 2.62[137] | 2.22[138] | 1.88[139] | 4.24[140] |
21 | PCOLCE2 | Procollagen C-endopeptidase enhancer 2 | [141] | -2.86[142] | -5.38[143] | 0.70[144] | -1.11[145] | -3.00[146] | -0.53[147] |
22 | PLEC | Plectin | [148] | 3.36[149] | 1.20[150] | 2.79[151] | 4.15[152] | 4.10[153] | 3.80[154] |
23 | BMP1 | Bone morphogenetic protein 1 | [155] | 0.70[156] | -0.56[157] | -1.04[158] | 1.59[159] | 1.31[160] | 0.72[161] |
24 | COL27A1 | Collagen alpha-1(XXVII) chain | [162] | 1.80[163] | 2.85[164] | 1.97[165] | -1.18[166] | -1.03[167] | 0.21[168] |
25 | COL6A1 | Collagen alpha-1(VI) chain | [169] | 0.21[170] | -1.45[171] | 2.19[172] | 2.94[173] | 3.73[174] | 2.67[175] |
26 | COL16A1 | Collagen alpha-1(XVI) chain | [176] | 1.74[177] | 1.23[178] | -6.94[179] | -1.15[180] | -0.35[181] | -1.79[182] |
27 | COL4A5 | Collagen alpha-5(IV) chain | [183] | 3.23[184] | -5.83[185] | 0.16[186] | 2.19[187] | 3.78[188] | -0.87[189] |
28 | LOXL4 | Lysyl oxidase homolog 4 | [190] | 4.89[191] | 3.20[192] | -2.08[193] | -0.43[194] | -1.54[195] | -0.80[196] |
29 | COL5A2 | Collagen alpha-2(V) chain | [197] | -1.25[198] | -0.97[199] | 7.16[200] | 6.28[201] | 5.87[202] | 2.73[203] |
30 | COL9A2 | Collagen alpha-2(IX) chain | [204] | 3.74[205] | 3.42[206] | 2.77[207] | 0.35[208] | -2.67[209] | -3.59[210] |
31 | COL5A3 | Collagen alpha-3(V) chain | [211] | -4.06[212] | -4.11[213] | 0.55[214] | -2.23[215] | -4.03[216] | 0.84[217] |
32 | COL6A2 | Collagen alpha-2(VI) chain | [218] | -0.58[219] | -3.32[220] | 2.09[221] | 4.52[222] | 4.96[223] | 3.89[224] |
33 | MMP9 | Matrix metalloproteinase-9 | [225] | -2.75[226] | -3.56[227] | -5.77[228] | -1.96[229] | -4.21[230] | -0.34[231] |
34 | COL4A2 | Collagen alpha-2(IV) chain | [232] | -0.10[233] | 0.46[234] | -2.05[235] | 6.66[236] | 6.88[237] | 4.95[238] |
35 | COL3A1 | Collagen alpha-1(III) chain | [239] | -1.03[240] | -2.39[241] | 0.18[242] | 9.43[243] | 7.96[244] | 7.40[245] |
36 | COL1A1 | Collagen alpha-1(I) chain | [246] | 4.70[247] | -2.57[248] | -0.56[249] | 6.48[250] | 8.33[251] | 6.15[252] |
37 | LAMA3 | Laminin subunit alpha-3 | [253] | 3.49[254] | 3.57[255] | -0.28[256] | 3.96[257] | 1.57[258] | 1.33[259] |
38 | COL7A1 | Collagen alpha-1(VII) chain | [260] | 2.85[261] | 6.06[262] | 3.29[263] | 5.26[264] | 4.53[265] | 0.08[266] |
39 | COL1A2 | Collagen alpha-2(I) chain | [267] | -6.19[268] | -5.87[269] | -3.20[270] | 4.45[271] | 4.80[272] | 6.22[273] |
40 | COL4A1 | Collagen alpha-1(IV) chain | [274] | -2.77[275] | -3.52[276] | -1.98[277] | 6.86[278] | 6.95[279] | 5.87[280] |
41 | PXDN | Peroxidasin homolog | [281] | -4.10[282] | -3.78[283] | -3.70[284] | -0.41[285] | 6.70[286] | 5.22[287] |
42 | ADAMTS2 | A disintegrin and metalloproteinase with thrombospondin motifs 2 | [288] | 1.35[289] | 2.42[290] | -3.69[291] | 2.04[292] | 5.13[293] | 5.51[294] |
43 | COL4A6 | Collagen alpha-6(IV) chain | [295] | 4.45[296] | -4.60[297] | -3.85[298] | 0.88[299] | 4.97[300] | -1.82[301] |
44 | LOXL3 | Lysyl oxidase homolog 3 | [302] | 2.10[303] | 1.92[304] | 0.99[305] | 0.50[306] | 3.07[307] | 1.05[308] |
45 | MMP7 | Matrilysin | [309] | 0.39[310] | -2.16[311] | [312] | 2.02[313] | -2.93[314] | 0.51[315] |
46 | LOXL2 | Lysyl oxidase homolog 2 | [316] | 6.37[317] | 0.27[318] | 1.80[319] | 6.91[320] | 8.05[321] | 3.31[322] |
47 | P4HA3 | Prolyl 4-hydroxylase subunit alpha-3 | [323] | -3.26[324] | -5.56[325] | -2.97[326] | 0.97[327] | 2.41[328] | -0.08[329] |
48 | LOX | Protein-lysine 6-oxidase | [330] | 7.77[331] | 8.52[332] | 9.35[333] | 4.72[334] | 9.12[335] | 3.33[336] |
49 | COL17A1 | Collagen alpha-1(XVII) chain | [337] | 1.62[338] | -2.94[339] | -2.24[340] | -1.58[341] | 0.24[342] | -0.54[343] |
50 | LOXL1 | Lysyl oxidase homolog 1 | [344] | 1.63[345] | -1.00[346] | 0.81[347] | 6.52[348] | 5.37[349] | -0.21[350] |
51 | COL15A1 | Collagen alpha-1(XV) chain | [351] | -1.40[352] | -5.29[353] | [354] | 2.68[355] | -1.06[356] | 0.69[357] |
52 | COL2A1 | Collagen alpha-1(II) chain | [358] | 0.55[359] | 3.57[360] | 6.23[361] | -2.88[362] | -2.84[363] | [364] |
53 | ITGB4 | Integrin beta-4 | [365] | 5.68[366] | 5.99[367] | 2.63[368] | 3.64[369] | 1.81[370] | 2.61[371] |
54 | COL12A1 | Collagen alpha-1(XII) chain | [372] | 0.38[373] | -1.71[374] | 5.65[375] | 10.27[376] | 7.39[377] | 5.00[378] |
55 | COL6A3 | Collagen alpha-3(VI) chain | [379] | 0.10[380] | -2.22[381] | -2.45[382] | 6.89[383] | 7.86[384] | 7.61[385] |
56 | COL14A1 | Collagen alpha-1(XIV) chain | [386] | -0.23[387] | 0.36[388] | 10.31[389] | 4.57[390] | 0.13[391] | 7.10[392] |
57 | COL25A1 | Collagen alpha-1(XXV) chain | [393] | [394] | -2.15[395] | [396] | -6.10[397] | -0.50[398] | 4.10[399] |
58 | COL4A3 | Collagen alpha-3(IV) chain | [400] | -3.33[401] | -2.84[402] | -1.24[403] | 5.61[404] | -1.30[405] | 3.32[406] |
59 | COL4A4 | Collagen alpha-4(IV) chain | [407] | -1.42[408] | -4.02[409] | 0.40[410] | 7.82[411] | 3.73[412] | 5.81[413] |
60 | COL13A1 | Collagen alpha-1(XIII) chain | [414] | -2.85[415] | [416] | -4.01[417] | 0.08[418] | 3.44[419] | 0.77[420] |
61 | COL5A1 | Collagen alpha-1(V) chain | [421] | 3.39[422] | 0.02[423] | 1.49[424] | 10.57[425] | 9.93[426] | 6.91[427] |
62 | ADAMTS3 | A disintegrin and metalloproteinase with thrombospondin motifs 3 | [428] | -4.55[429] | [430] | 1.15[431] | 0.85[432] | 5.08[433] | 2.18[434] |
63 | COL22A1 | Collagen alpha-1(XXII) chain | [435] | -3.46[436] | [437] | [438] | -5.45[439] | -1.33[440] | [441] |
64 | COL11A2 | Collagen alpha-2(XI) chain | [442] | 1.41[443] | 3.22[444] | 2.85[445] | 4.36[446] | 2.37[447] | 2.65[448] |
65 | COL28A1 | Collagen alpha-1(XXVIII) chain | [449] | -1.97[450] | -0.50[451] | 5.68[452] | 2.42[453] | -2.79[454] | 1.75[455] |
66 | TLL1 | Tolloid-like protein 1 | [456] | [457] | -3.55[458] | 2.96[459] | -5.25[460] | 4.71[461] | 1.99[462] |
67 | TLL2 | Tolloid-like protein 2 | [463] | 2.26[464] | 0.48[465] | 2.87[466] | 3.16[467] | 0.42[468] | 0.82[469] |
68 | COL9A1 | Collagen alpha-1(IX) chain | [470] | -2.59[471] | [472] | [473] | -4.12[474] | [475] | -1.29[476] |
69 | MMP20 | Matrix metalloproteinase-20 | [477] | 4.28[478] | 4.53[479] | [480] | -1.13[481] | -3.30[482] | -2.59[483] |
70 | COL11A1 | Collagen alpha-1(XI) chain | [484] | 0.36[485] | [486] | -0.47[487] | 5.69[488] | 3.31[489] | 0.07[490] |
71 | COL23A1 | Collagen alpha-1(XXIII) chain | [491] | -0.33[492] | [493] | [494] | -2.43[495] | [496] | 3.61[497] |
72 | COL8A1 | Collagen alpha-1(VIII) chain | [498] | -0.78[499] | 0.25[500] | 1.25[501] | 4.37[502] | 10.74[503] | 5.85[504] |
73 | ADAMTS1 | A disintegrin and metalloproteinase with thrombospondin motifs 14 | 6.75[505] | 0.95[506] | [507] | 4.77[508] | 8.01[509] | 4.95[510] | |
74 | COL8A2 | Collagen alpha-2(VIII) chain | [511] | 5.77[512] | 4.17[513] | 5.67[514] | 3.96[515] | 6.00[516] | 4.60[517] |
75 | COL19A1 | Collagen alpha-1(XIX) chain | [518] | -0.36[519] | [520] | 5.09[521] | 1.74[522] | 0.61[523] | 5.54[524] |
76 | COLGALT2 | Procollagen galactosyltransferase 2 | [525] | [526] | [527] | [528] | [529] | [530] | [531] |
77 | COL10A1 | Collagen alpha-1(X) chain | [532] | [533] | [534] | [535] | [536] | [537] | [538] |
78 | P3H3 | Prolyl 3-hydroxylase 3 | [539] | [540] | [541] | [542] | [543] | [544] | [545] |
79 | COL20A1 | Collagen alpha-1(XX) chain | [546] | [547] | [548] | [549] | [550] | [551] | [552] |
80 | COLGALT1 | Procollagen galactosyltransferase 1 | [553] | [554] | [555] | [556] | [557] | [558] | [559] |
81 | CTSL | Cathepsin L1 | [560] | [561] | [562] | [563] | [564] | [565] | [566] |
82 | COL21A1 | Collagen alpha-1(XXI) chain | [567] | [568] | [569] | [570] | [571] | [572] | [573] |
83 | COL6A6 | Collagen alpha-6(VI) chain | [574] | [575] | [576] | [577] | [578] | [579] | [580] |
84 | COL26A1 | Collagen alpha-1(XXVI) chain | [581] | [582] | [583] | [584] | [585] | [586] | [587] |
85 | COL6A5 | Collagen alpha-5(VI) chain | [588] | [589] | [590] | [591] | [592] | [593] | [594] |
86 | COL24A1 | Collagen alpha-1(XXIV) chain | [595] | [596] | [597] | [598] | [599] | [600] | [601] |
87 | CTSV | Cathepsin L2 | [602] | [603] | [604] | [605] | [606] | [607] | [608] |
88 | P3H1 | Prolyl 3-hydroxylase 1 | [609] | [610] | [611] | [612] | [613] | [614] | [615] |
89 | P3H2 | Prolyl 3-hydroxylase 2 | [616] | [617] | [618] | [619] | [620] | [621] | [622] |
90 | MMP13 | Collagenase 3 | [623] | [624] | [625] | [626] | [627] | [628] | [629] |