REACTOME_TRNA_PROCESSING | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | TRMT112 | Multifunctional methyltransferase subunit TRM112-like protein | [1] | -2.86[2] | -2.87[3] | -3.35[4] | -3.00[5] | -3.30[6] | -3.78[7] |
2 | RAN | GTP-binding nuclear protein Ran | [8] | -0.15[9] | -0.26[10] | -0.97[11] | -0.86[12] | -0.68[13] | -1.82[14] |
3 | HSD17B10 | 3-hydroxyacyl-CoA dehydrogenase type-2 | [15] | -2.50[16] | -3.00[17] | -2.81[18] | -2.27[19] | -1.54[20] | -0.85[21] |
4 | SEC13 | Protein SEC13 homolog | [22] | -0.74[23] | -0.60[24] | -0.46[25] | -1.43[26] | -1.33[27] | -1.44[28] |
5 | DDX1 | ATP-dependent RNA helicase DDX1 | [29] | 0.13[30] | 0.42[31] | 0.08[32] | 0.78[33] | -0.05[34] | -0.52[35] |
6 | NSUN2 | tRNA (cytosine(34)-C(5))-methyltransferase | [36] | -0.06[37] | -0.65[38] | -0.74[39] | -0.22[40] | 0.56[41] | -0.30[42] |
7 | XPOT | Exportin-T | [43] | 0.70[44] | 1.14[45] | 1.19[46] | 0.44[47] | 1.23[48] | 0.51[49] |
8 | URM1 | Ubiquitin-related modifier 1 | [50] | -0.48[51] | -0.63[52] | -1.43[53] | -0.52[54] | -0.42[55] | -1.38[56] |
9 | POP7 | Ribonuclease P protein subunit p20 | [57] | -1.02[58] | -0.77[59] | -0.92[60] | -1.64[61] | -1.38[62] | -1.40[63] |
10 | RPP21 | Ribonuclease P protein subunit p21 | [64] | -4.02[65] | -4.07[66] | -4.86[67] | -4.62[68] | -4.77[69] | -5.43[70] |
11 | ZBTB8OS | Protein archease | [71] | -1.51[72] | -1.25[73] | -1.87[74] | -1.73[75] | -1.78[76] | -2.49[77] |
12 | POP5 | Ribonuclease P/MRP protein subunit POP5 | [78] | -0.71[79] | -0.42[80] | -0.58[81] | -0.83[82] | -0.31[83] | -1.22[84] |
13 | ELAC2 | Zinc phosphodiesterase ELAC protein 2 | [85] | 0.82[86] | 0.48[87] | 0.66[88] | 0.90[89] | 0.72[90] | 1.06[91] |
14 | RAE1 | mRNA export factor | [92] | 0.79[93] | 0.27[94] | -0.91[95] | 0.87[96] | 0.13[97] | -0.90[98] |
15 | NUP88 | Nuclear pore complex protein Nup88 | [99] | 0.16[100] | 0.45[101] | 0.50[102] | -0.04[103] | 0.41[104] | 1.23[105] |
16 | SEH1L | Nucleoporin SEH1 | [106] | 0.44[107] | 0.69[108] | 1.10[109] | 0.87[110] | 0.04[111] | 0.30[112] |
17 | TRMT1 | tRNA (guanine(26)-N(2))-dimethyltransferase | [113] | 0.29[114] | 0.38[115] | 0.59[116] | -0.85[117] | 0.07[118] | -0.80[119] |
18 | FTSJ1 | Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase | [120] | -0.14[121] | -0.37[122] | -0.02[123] | 0.25[124] | 0.50[125] | -0.62[126] |
19 | QTRT1 | Queuine tRNA-ribosyltransferase catalytic subunit 1 | [127] | -0.28[128] | 0.02[129] | -0.11[130] | -1.63[131] | -1.08[132] | -0.88[133] |
20 | TRMT11 | tRNA (guanine(10)-N2)-methyltransferase homolog | [134] | -1.14[135] | 0.04[136] | -1.14[137] | -1.34[138] | -1.01[139] | 0.46[140] |
21 | PUS1 | tRNA pseudouridine synthase A | [141] | -0.19[142] | -0.09[143] | -0.40[144] | -1.32[145] | -1.22[146] | -1.84[147] |
22 | NSUN6 | Putative methyltransferase NSUN6 | [148] | -1.92[149] | -0.20[150] | -1.14[151] | -1.31[152] | -2.50[153] | 0.92[154] |
23 | OSGEP | Probable tRNA N6-adenosine threonylcarbamoyltransferase | [155] | -0.61[156] | -0.91[157] | -0.90[158] | -1.37[159] | -0.96[160] | -0.74[161] |
24 | TSEN34 | tRNA-splicing endonuclease subunit Sen34 | [162] | 0.93[163] | 1.16[164] | 0.88[165] | 0.81[166] | 0.24[167] | -0.65[168] |
25 | POP4 | Ribonuclease P protein subunit p29 | [169] | -0.35[170] | -0.56[171] | -0.45[172] | -0.04[173] | -0.19[174] | -0.12[175] |
26 | TSEN15 | tRNA-splicing endonuclease subunit Sen15 | [176] | -0.06[177] | 0.01[178] | -0.65[179] | 0.68[180] | 0.49[181] | -0.50[182] |
27 | NUP35 | Nucleoporin NUP53 | [183] | -0.87[184] | -0.52[185] | -0.60[186] | -0.80[187] | -1.06[188] | -1.10[189] |
28 | NUP62 | Nuclear pore glycoprotein p62 | [190] | 1.39[191] | 0.76[192] | 1.76[193] | 1.50[194] | 1.54[195] | 0.54[196] |
29 | TPRKB | EKC/KEOPS complex subunit TPRKB | [197] | -0.86[198] | -0.60[199] | -0.45[200] | -0.16[201] | -0.42[202] | -1.19[203] |
30 | PUS3 | tRNA pseudouridine(38/39) synthase | [204] | -1.36[205] | -1.52[206] | -1.25[207] | -1.35[208] | -1.58[209] | 0.16[210] |
31 | TRMU | Mitochondrial tRNA-specific 2-thiouridylase 1 | [211] | -0.29[212] | 0.02[213] | -0.43[214] | -1.09[215] | -0.67[216] | -0.16[217] |
32 | MTO1 | Protein MTO1 homolog, mitochondrial | [218] | -0.36[219] | -0.34[220] | 0.63[221] | -0.35[222] | -0.05[223] | 0.96[224] |
33 | NUP85 | Nuclear pore complex protein Nup85 | [225] | 0.96[226] | 1.08[227] | 1.27[228] | 0.87[229] | 1.02[230] | 0.34[231] |
34 | AAAS | Aladin | [232] | 0.48[233] | 0.56[234] | 0.10[235] | 0.51[236] | 0.49[237] | -0.07[238] |
35 | CPSF4 | Cleavage and polyadenylation specificity factor subunit 4 | [239] | 0.74[240] | 0.27[241] | 0.40[242] | 0.07[243] | -0.02[244] | -1.48[245] |
36 | NUP50 | Nuclear pore complex protein Nup50 | [246] | 0.99[247] | 1.43[248] | 1.78[249] | 1.28[250] | 1.72[251] | 1.68[252] |
37 | RANBP2 | E3 SUMO-protein ligase RanBP2 | [253] | 0.69[254] | 2.14[255] | 1.83[256] | 1.83[257] | 1.93[258] | 3.07[259] |
38 | NUP93 | Nuclear pore complex protein Nup93 | [260] | 1.89[261] | 1.18[262] | 1.10[263] | 1.23[264] | 1.48[265] | -0.39[266] |
39 | NUP98 | Nuclear pore complex protein Nup98-Nup96 | [267] | 2.39[268] | 1.84[269] | 2.05[270] | 2.52[271] | 2.03[272] | 1.98[273] |
40 | NUP54 | Nucleoporin p54 | [274] | 0.32[275] | 0.73[276] | 0.67[277] | 0.62[278] | 1.04[279] | 0.13[280] |
41 | TYW3 | tRNA wybutosine-synthesizing protein 3 homolog | [281] | 0.08[282] | 0.93[283] | 0.34[284] | 0.10[285] | -0.69[286] | 0.09[287] |
42 | CPSF1 | Cleavage and polyadenylation specificity factor subunit 1 | [288] | 2.17[289] | 2.00[290] | 2.38[291] | 1.65[292] | 1.11[293] | 1.09[294] |
43 | TRMT6 | tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 | 0.78[295] | 0.45[296] | -0.14[297] | 0.64[298] | 0.41[299] | -1.19[300] | |
44 | NUP107 | Nuclear pore complex protein Nup107 | [301] | 0.72[302] | 1.59[303] | 1.53[304] | 1.59[305] | 1.46[306] | 0.11[307] |
45 | METTL1 | tRNA (guanine-N(7)-)-methyltransferase | [308] | -0.21[309] | 0.07[310] | -0.28[311] | -0.55[312] | -0.74[313] | -1.36[314] |
46 | NUP37 | Nucleoporin Nup37 | [315] | 0.87[316] | 0.92[317] | 0.96[318] | 0.74[319] | 0.68[320] | -1.31[321] |
47 | TPR | Nucleoprotein TPR | [322] | 0.85[323] | 2.48[324] | 2.74[325] | 2.84[326] | 3.01[327] | 2.71[328] |
48 | CTU2 | Cytoplasmic tRNA 2-thiolation protein 2 | [329] | 0.12[330] | 0.24[331] | -0.11[332] | -0.60[333] | -0.49[334] | -1.10[335] |
49 | C2orf49 | Ashwin | [336] | -0.86[337] | -0.89[338] | -1.23[339] | -1.09[340] | -1.19[341] | -1.59[342] |
50 | FAM98B | Protein FAM98B | [343] | -0.59[344] | -0.89[345] | -0.99[346] | 0.55[347] | 0.47[348] | -2.88[349] |
51 | RPP14 | Ribonuclease P protein subunit p14 | [350] | 0.55[351] | 0.28[352] | -0.21[353] | -0.16[354] | 0.81[355] | 1.35[356] |
52 | THG1L | Probable tRNA(His) guanylyltransferase | [357] | -0.74[358] | -0.36[359] | -2.18[360] | -0.83[361] | -1.32[362] | -1.62[363] |
53 | TRMT61A | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A | 1.09[364] | 0.30[365] | -1.02[366] | 0.69[367] | -0.01[368] | -0.14[369] | |
54 | RPP38 | Ribonuclease P protein subunit p38 | [370] | -0.39[371] | -0.20[372] | -0.78[373] | 0.50[374] | -0.20[375] | -0.58[376] |
55 | TRIT1 | tRNA dimethylallyltransferase | [377] | -0.11[378] | -0.26[379] | -0.01[380] | 0.54[381] | 0.44[382] | -0.66[383] |
56 | TP53RK | TP53-regulating kinase | [384] | 1.44[385] | 1.19[386] | -0.86[387] | 0.76[388] | 0.47[389] | 0.04[390] |
57 | TSEN54 | tRNA-splicing endonuclease subunit Sen54 | [391] | 1.26[392] | 1.58[393] | 0.78[394] | 0.29[395] | -0.21[396] | -0.51[397] |
58 | NUP160 | Nuclear pore complex protein Nup160 | [398] | 2.07[399] | 1.98[400] | 2.53[401] | 1.47[402] | 1.72[403] | 1.59[404] |
59 | THADA | Thyroid adenoma-associated protein | [405] | 1.13[406] | 0.91[407] | 0.92[408] | 0.92[409] | 0.62[410] | 2.04[411] |
60 | TYW1 | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase | -0.50[412] | -0.85[413] | 0.22[414] | 0.07[415] | -0.45[416] | 0.61[417] | |
61 | POM121 | Nuclear envelope pore membrane protein POM 121 | [418] | 1.66[419] | 1.78[420] | 1.57[421] | 1.84[422] | 1.23[423] | 1.41[424] |
62 | NUP133 | Nuclear pore complex protein Nup133 | [425] | 1.40[426] | 1.51[427] | 2.42[428] | 2.50[429] | 1.80[430] | 1.17[431] |
63 | CSTF2 | Cleavage stimulation factor subunit 2 | [432] | 0.95[433] | 0.27[434] | 0.70[435] | 1.33[436] | 1.14[437] | -0.59[438] |
64 | LAGE3 | EKC/KEOPS complex subunit LAGE3 | [439] | 0.08[440] | -0.56[441] | 0.09[442] | 0.84[443] | 0.30[444] | -0.68[445] |
65 | TRMT61B | tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial | [446] | -0.40[447] | 0.01[448] | -0.22[449] | -0.31[450] | -0.09[451] | -0.43[452] |
66 | NUP153 | Nuclear pore complex protein Nup153 | [453] | 2.61[454] | 2.57[455] | 2.16[456] | 3.55[457] | 2.66[458] | 2.06[459] |
67 | RPP40 | Ribonuclease P protein subunit p40 | [460] | 0.39[461] | 0.39[462] | -2.31[463] | 0.60[464] | -0.64[465] | -0.77[466] |
68 | RPP30 | Ribonuclease P protein subunit p30 | [467] | 0.93[468] | 1.18[469] | 0.34[470] | 0.64[471] | 2.01[472] | 0.08[473] |
69 | NUP43 | Nucleoporin Nup43 | [474] | 2.13[475] | 2.07[476] | 1.77[477] | 2.38[478] | 2.06[479] | 0.43[480] |
70 | PUS7 | Pseudouridylate synthase 7 homolog | [481] | 1.12[482] | 1.02[483] | 0.82[484] | 0.94[485] | 0.66[486] | 0.44[487] |
71 | NUP205 | Nuclear pore complex protein Nup205 | [488] | 2.40[489] | 2.08[490] | 3.20[491] | 3.07[492] | 3.20[493] | 1.63[494] |
72 | CLP1 | Polyribonucleotide 5'-hydroxyl-kinase Clp1 | [495] | 0.82[496] | 0.15[497] | 1.63[498] | 0.22[499] | 0.43[500] | -0.23[501] |
73 | ADAT1 | tRNA-specific adenosine deaminase 1 | [502] | 0.30[503] | -0.25[504] | -0.61[505] | 0.90[506] | 0.72[507] | 0.96[508] |
74 | POM121C | Nuclear envelope pore membrane protein POM 121C | [509] | 1.50[510] | 0.53[511] | 0.15[512] | 1.70[513] | 1.07[514] | 0.55[515] |
75 | GTPBP3 | tRNA modification GTPase GTPBP3, mitochondrial | [516] | 1.04[517] | 1.29[518] | 1.73[519] | -0.39[520] | 0.21[521] | -0.44[522] |
76 | TRNT1 | CCA tRNA nucleotidyltransferase 1, mitochondrial | [523] | 0.26[524] | 0.37[525] | 0.39[526] | 0.01[527] | 0.11[528] | 0.68[529] |
77 | TRMT12 | tRNA wybutosine-synthesizing protein 2 homolog | [530] | -1.87[531] | -5.38[532] | -0.69[533] | -0.04[534] | 0.12[535] | -0.25[536] |
78 | WDR4 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 | 0.68[537] | 0.25[538] | -1.67[539] | 0.47[540] | 0.18[541] | -0.02[542] | |
79 | NUP214 | Nuclear pore complex protein Nup214 | [543] | 2.24[544] | 1.31[545] | 2.39[546] | 2.48[547] | 2.35[548] | 1.87[549] |
80 | CDKAL1 | Threonylcarbamoyladenosine tRNA methylthiotransferase | [550] | 0.67[551] | 0.25[552] | -0.17[553] | 0.93[554] | 0.35[555] | 0.88[556] |
81 | NUP188 | Nucleoporin NUP188 homolog | [557] | 3.48[558] | 2.62[559] | 3.21[560] | 2.81[561] | 3.93[562] | 1.94[563] |
82 | NUP210 | Nuclear pore membrane glycoprotein 210 | [564] | 3.92[565] | 3.49[566] | 4.54[567] | 2.40[568] | 0.74[569] | 3.11[570] |
83 | LCMT2 | tRNA wybutosine-synthesizing protein 4 | [571] | 0.29[572] | -0.34[573] | -0.51[574] | 0.43[575] | 0.64[576] | 0.51[577] |
84 | NUP155 | Nuclear pore complex protein Nup155 | [578] | 2.33[579] | 1.70[580] | 2.63[581] | 2.77[582] | 3.59[583] | 1.85[584] |
85 | TSEN2 | tRNA-splicing endonuclease subunit Sen2 | [585] | 0.21[586] | 0.44[587] | 0.63[588] | -0.26[589] | 0.26[590] | 0.80[591] |
86 | ALKBH8 | Alkylated DNA repair protein alkB homolog 8 | [592] | 0.32[593] | 0.40[594] | -0.15[595] | 1.59[596] | 0.82[597] | 0.89[598] |
87 | TRMT5 | tRNA (guanine(37)-N1)-methyltransferase | [599] | 1.15[600] | 1.31[601] | 1.67[602] | 1.96[603] | 1.96[604] | 1.16[605] |
88 | TYW5 | tRNA wybutosine-synthesizing protein 5 | [606] | 0.90[607] | 2.19[608] | 1.66[609] | 1.00[610] | 1.40[611] | 1.37[612] |
89 | POP1 | Ribonucleases P/MRP protein subunit POP1 | [613] | 1.68[614] | 1.01[615] | 2.22[616] | 2.49[617] | 2.68[618] | 0.78[619] |
90 | CTU1 | Cytoplasmic tRNA 2-thiolation protein 1 | [620] | -0.18[621] | -0.34[622] | -0.58[623] | -0.44[624] | 0.14[625] | -1.06[626] |
91 | RPP25 | Ribonuclease P protein subunit p25 | [627] | -2.04[628] | -3.81[629] | 1.96[630] | 2.15[631] | 2.47[632] | 0.36[633] |
92 | ADAT2 | tRNA-specific adenosine deaminase 2 | [634] | 1.89[635] | 2.56[636] | 1.40[637] | 1.31[638] | 1.16[639] | 1.51[640] |
93 | ADAT3 | Probable inactive tRNA-specific adenosine deaminase-like protein 3 | 0.87[641] | 0.71[642] | -0.10[643] | -1.08[644] | 0.70[645] | 0.08[646] | |
94 | TRDMT1 | tRNA (cytosine(38)-C(5))-methyltransferase | [647] | 2.33[648] | 2.28[649] | 0.43[650] | 5.07[651] | 3.83[652] | 2.61[653] |
95 | PRORP | [654] | [655] | [656] | [657] | [658] | [659] | [660] | |
96 | NUP42 | [661] | [662] | [663] | [664] | [665] | [666] | [667] | |
97 | NUP58 | Nucleoporin p58/p45 | [668] | [669] | [670] | [671] | [672] | [673] | [674] |
98 | MT-RNR2 | Humanin | [675] | [676] | [677] | [678] | [679] | [680] | [681] |
99 | MT-RNR1 | Mitochondrial-derived peptide MOTS-c | [682] | [683] | [684] | [685] | [686] | [687] | [688] |
100 | TRMT10C | tRNA methyltransferase 10 homolog C | [689] | [690] | [691] | [692] | [693] | [694] | [695] |
101 | RPPH1 | [696] | [697] | [698] | [699] | [700] | [701] | [702] | |
102 | DUS2 | tRNA-dihydrouridine(20) synthase [NAD(P)+]-like | [703] | [704] | [705] | [706] | [707] | [708] | [709] |
103 | TRMT9B | [710] | [711] | [712] | [713] | [714] | [715] | [716] | |
104 | NDC1 | Nucleoporin NDC1 | [717] | [718] | [719] | [720] | [721] | [722] | [723] |
105 | TRMT10A | tRNA methyltransferase 10 homolog A | [724] | [725] | [726] | [727] | [728] | [729] | [730] |
106 | RTCB | tRNA-splicing ligase RtcB homolog | [731] | [732] | [733] | [734] | [735] | [736] | [737] |
107 | TRMT44 | Probable tRNA (uracil-O(2)-)-methyltransferase | [738] | [739] | [740] | [741] | [742] | [743] | [744] |
108 | RTRAF | RNA transcription, translation and transport factor protein | [745] | [746] | [747] | [748] | [749] | [750] | [751] |
109 | TRMT13 | tRNA:m(4)X modification enzyme TRM13 homolog | [752] | [753] | [754] | [755] | [756] | [757] | [758] |
110 | EPRS1 | [759] | [760] | [761] | [762] | [763] | [764] | [765] | |
111 | QTRT2 | Queuine tRNA-ribosyltransferase accessory subunit 2 | [766] | [767] | [768] | [769] | [770] | [771] | [772] |