REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[1] |
-2.46[2] |
-2.56[3] |
-2.86[4] |
-2.07[5] |
-2.23[6] |
-0.73[7] |
2 |
TAF9 |
Transcription initiation factor TFIID subunit 9 |
[8] |
-1.11[9] |
-0.43[10] |
-0.96[11] |
-1.12[12] |
-0.97[13] |
-0.55[14] |
3 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[15] |
-3.16[16] |
-2.96[17] |
-2.74[18] |
-3.30[19] |
-3.07[20] |
-2.48[21] |
4 |
TAF10 |
Transcription initiation factor TFIID subunit 10 |
[22] |
-1.75[23] |
-2.09[24] |
-1.61[25] |
-1.64[26] |
-2.39[27] |
-2.02[28] |
5 |
SSRP1 |
FACT complex subunit SSRP1 |
[29] |
0.65[30] |
0.14[31] |
0.37[32] |
0.31[33] |
0.71[34] |
-0.94[35] |
6 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[36] |
0.62[37] |
0.48[38] |
0.51[39] |
-0.44[40] |
0.33[41] |
1.09[42] |
7 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[43] |
-1.56[44] |
-1.03[45] |
-1.12[46] |
-2.55[47] |
-1.95[48] |
-1.35[49] |
8 |
TAF7 |
Transcription initiation factor TFIID subunit 7 |
[50] |
-0.11[51] |
0.05[52] |
-0.26[53] |
0.01[54] |
-0.04[55] |
-0.18[56] |
9 |
TAF13 |
Transcription initiation factor TFIID subunit 13 |
[57] |
-3.25[58] |
-3.46[59] |
-4.45[60] |
-2.61[61] |
-2.81[62] |
-3.62[63] |
10 |
TCEA1 |
Transcription elongation factor A protein 1 |
[64] |
0.34[65] |
0.82[66] |
0.18[67] |
0.98[68] |
0.71[69] |
0.89[70] |
11 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[71] |
-1.26[72] |
-1.11[73] |
-1.99[74] |
-2.48[75] |
-1.83[76] |
-0.46[77] |
12 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[78] |
-1.58[79] |
-0.82[80] |
-0.99[81] |
-0.83[82] |
-1.02[83] |
-0.67[84] |
13 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[85] |
-1.15[86] |
-0.96[87] |
-1.53[88] |
-1.03[89] |
-1.25[90] |
-1.22[91] |
14 |
SUPT5H |
Transcription elongation factor SPT5 |
[92] |
0.30[93] |
-0.10[94] |
0.80[95] |
0.57[96] |
0.30[97] |
0.27[98] |
15 |
TAF15 |
TATA-binding protein-associated factor 2N |
[99] |
0.15[100] |
-0.56[101] |
0.26[102] |
0.28[103] |
0.60[104] |
-1.52[105] |
16 |
GTF2F2 |
General transcription factor IIF subunit 2 |
[106] |
-1.94[107] |
-1.39[108] |
-1.14[109] |
-2.00[110] |
-1.86[111] |
-1.97[112] |
17 |
SUPT4H1 |
Transcription elongation factor SPT4 |
[113] |
-0.23[114] |
-0.23[115] |
-0.72[116] |
-1.52[117] |
-1.02[118] |
-1.21[119] |
18 |
NCBP2 |
Nuclear cap-binding protein subunit 2 |
[120] |
-0.46[121] |
-0.08[122] |
-0.07[123] |
-0.74[124] |
-0.58[125] |
-0.73[126] |
19 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[127] |
0.83[128] |
0.85[129] |
0.28[130] |
-0.11[131] |
0.02[132] |
0.15[133] |
20 |
SUPT16H |
FACT complex subunit SPT16 |
[134] |
1.62[135] |
0.82[136] |
1.51[137] |
1.61[138] |
1.71[139] |
0.56[140] |
21 |
GTF2E2 |
Transcription initiation factor IIE subunit beta |
[141] |
-0.45[142] |
-0.73[143] |
-0.39[144] |
-0.77[145] |
-1.15[146] |
-0.79[147] |
22 |
CCNH |
Cyclin-H |
[148] |
-1.66[149] |
-0.89[150] |
-1.57[151] |
-1.65[152] |
-0.36[153] |
-0.32[154] |
23 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[155] |
-1.58[156] |
-1.54[157] |
-1.68[158] |
-2.15[159] |
-2.16[160] |
-0.42[161] |
24 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[162] |
-0.10[163] |
0.06[164] |
-0.60[165] |
-0.32[166] |
0.03[167] |
-0.09[168] |
25 |
GTF2F1 |
General transcription factor IIF subunit 1 |
[169] |
0.40[170] |
-0.10[171] |
1.31[172] |
-0.27[173] |
0.15[174] |
-0.66[175] |
26 |
TAF11 |
Transcription initiation factor TFIID subunit 11 |
[176] |
-0.58[177] |
-0.39[178] |
-1.17[179] |
-0.14[180] |
-0.82[181] |
-1.32[182] |
27 |
TAF12 |
Transcription initiation factor TFIID subunit 12 |
[183] |
-1.63[184] |
-1.86[185] |
-0.90[186] |
-1.12[187] |
-1.52[188] |
-1.07[189] |
28 |
GTF2A2 |
Transcription initiation factor IIA subunit 2 |
[190] |
-0.44[191] |
-0.57[192] |
-0.99[193] |
0.16[194] |
0.36[195] |
-0.25[196] |
29 |
CDK9 |
Cyclin-dependent kinase 9 |
[197] |
-0.36[198] |
-0.82[199] |
-0.80[200] |
-0.03[201] |
-0.42[202] |
0.76[203] |
30 |
CDK7 |
Cyclin-dependent kinase 7 |
[204] |
-0.64[205] |
0.29[206] |
-0.06[207] |
-0.44[208] |
-0.86[209] |
-1.75[210] |
31 |
GTF2B |
Transcription initiation factor IIB |
[211] |
-1.08[212] |
-0.70[213] |
-0.78[214] |
-0.90[215] |
-0.94[216] |
-0.25[217] |
32 |
CCNK |
Cyclin-K |
[218] |
0.16[219] |
-0.89[220] |
-0.77[221] |
0.53[222] |
-0.08[223] |
-1.44[224] |
33 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[225] |
1.23[226] |
1.52[227] |
1.39[228] |
1.23[229] |
1.84[230] |
1.56[231] |
34 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[232] |
-5.39[233] |
-4.53[234] |
-4.81[235] |
-5.06[236] |
-6.40[237] |
-4.07[238] |
35 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[239] |
0.26[240] |
0.31[241] |
-0.47[242] |
-0.28[243] |
-0.15[244] |
0.17[245] |
36 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[246] |
0.24[247] |
0.33[248] |
0.21[249] |
0.72[250] |
0.18[251] |
0.77[252] |
37 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[253] |
2.74[254] |
1.19[255] |
2.12[256] |
2.28[257] |
2.58[258] |
2.40[259] |
38 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[260] |
-0.24[261] |
0.14[262] |
0.17[263] |
0.44[264] |
-0.43[265] |
-1.06[266] |
39 |
TBP |
TATA-box-binding protein |
[267] |
-0.22[268] |
-0.01[269] |
-1.26[270] |
-0.95[271] |
-0.26[272] |
-0.47[273] |
40 |
TAF6 |
Transcription initiation factor TFIID subunit 6 |
[274] |
0.96[275] |
0.43[276] |
0.89[277] |
0.94[278] |
1.22[279] |
0.45[280] |
41 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[281] |
-0.61[282] |
0.61[283] |
-0.28[284] |
0.51[285] |
-0.04[286] |
-0.34[287] |
42 |
NCBP1 |
Nuclear cap-binding protein subunit 1 |
[288] |
1.26[289] |
1.40[290] |
1.15[291] |
1.88[292] |
2.33[293] |
1.85[294] |
43 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[295] |
1.21[296] |
1.55[297] |
1.44[298] |
1.49[299] |
1.17[300] |
0.73[301] |
44 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[302] |
1.13[303] |
1.09[304] |
1.46[305] |
1.44[306] |
1.26[307] |
-0.22[308] |
45 |
GTF2E1 |
General transcription factor IIE subunit 1 |
[309] |
-0.04[310] |
0.01[311] |
0.03[312] |
0.48[313] |
-0.44[314] |
-0.04[315] |
46 |
GTF2A1 |
Transcription initiation factor IIA subunit 1 |
[316] |
0.50[317] |
1.33[318] |
1.62[319] |
2.34[320] |
1.64[321] |
1.86[322] |
47 |
TAF9B |
Transcription initiation factor TFIID subunit 9B |
[323] |
-0.03[324] |
0.87[325] |
0.81[326] |
1.34[327] |
1.27[328] |
1.28[329] |
48 |
CTDP1 |
RNA polymerase II subunit A C-terminal domain phosphatase |
[330] |
1.35[331] |
0.50[332] |
0.44[333] |
0.56[334] |
0.68[335] |
0.93[336] |
49 |
CCNT1 |
Cyclin-T1 |
[337] |
1.04[338] |
1.90[339] |
1.80[340] |
2.04[341] |
1.91[342] |
2.23[343] |
50 |
RNGTT |
mRNA-capping enzyme |
[344] |
0.73[345] |
1.32[346] |
1.31[347] |
1.29[348] |
1.55[349] |
1.90[350] |
51 |
RNMT |
mRNA cap guanine-N7 methyltransferase |
[351] |
1.60[352] |
2.90[353] |
3.45[354] |
2.38[355] |
1.72[356] |
2.01[357] |
52 |
TAF4 |
Transcription initiation factor TFIID subunit 4 |
[358] |
1.42[359] |
0.93[360] |
0.64[361] |
0.89[362] |
-0.17[363] |
0.24[364] |
53 |
TAF2 |
Transcription initiation factor TFIID subunit 2 |
[365] |
0.61[366] |
1.20[367] |
1.61[368] |
2.10[369] |
1.86[370] |
2.52[371] |
54 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[372] |
1.60[373] |
1.92[374] |
1.68[375] |
1.40[376] |
1.47[377] |
1.64[378] |
55 |
ELL |
RNA polymerase II elongation factor ELL |
[379] |
0.89[380] |
0.97[381] |
1.12[382] |
0.29[383] |
1.02[384] |
1.09[385] |
56 |
TAF3 |
Transcription initiation factor TFIID subunit 3 |
[386] |
0.13[387] |
-0.22[388] |
0.10[389] |
0.80[390] |
0.57[391] |
0.99[392] |
57 |
CCNT2 |
Cyclin-T2 |
[393] |
1.28[394] |
3.03[395] |
2.44[396] |
2.58[397] |
2.08[398] |
3.51[399] |
58 |
TAF1 |
Transcription initiation factor TFIID subunit 1 |
[400] |
1.96[401] |
2.39[402] |
1.68[403] |
3.24[404] |
2.43[405] |
3.75[406] |
59 |
TAF5 |
Transcription initiation factor TFIID subunit 5 |
[407] |
0.24[408] |
1.18[409] |
2.51[410] |
0.02[411] |
1.23[412] |
1.01[413] |
60 |
TAF4B |
Transcription initiation factor TFIID subunit 4B |
[414] |
2.03[415] |
2.33[416] |
[417] |
3.13[418] |
3.40[419] |
1.51[420] |
61 |
TAF7L |
Transcription initiation factor TFIID subunit 7-like |
[421] |
-5.92[422] |
-4.66[423] |
-2.05[424] |
-2.02[425] |
-1.61[426] |
2.35[427] |
62 |
TAF1L |
Transcription initiation factor TFIID subunit 1-like |
[428] |
-1.72[429] |
-0.98[430] |
-2.72[431] |
-0.64[432] |
-1.96[433] |
-0.59[434] |
63 |
NELFA |
Negative elongation factor A |
[435] |
[436] |
[437] |
[438] |
[439] |
[440] |
[441] |
64 |
ENSG00000288631 |
[442] |
[443] |
[444] |
[445] |
[446] |
[447] |
[448] |
65 |
ENSG00000288607 |
[449] |
[450] |
[451] |
[452] |
[453] |
[454] |
[455] |
66 |
ELOB |
Elongin-B |
[456] |
[457] |
[458] |
[459] |
[460] |
[461] |
[462] |
67 |
ELOC |
Elongin-C |
[463] |
[464] |
[465] |
[466] |
[467] |
[468] |
[469] |
68 |
NELFB |
Negative elongation factor B |
[470] |
[471] |
[472] |
[473] |
[474] |
[475] |
[476] |
69 |
ELOA2 |
Elongin-A2 |
[477] |
[478] |
[479] |
[480] |
[481] |
[482] |
[483] |
70 |
ENSG00000288616 |
[484] |
[485] |
[486] |
[487] |
[488] |
[489] |
[490] |
71 |
NELFE |
Negative elongation factor E |
[491] |
[492] |
[493] |
[494] |
[495] |
[496] |
[497] |
72 |
NELFCD |
Negative elongation factor C/D |
[498] |
[499] |
[500] |
[501] |
[502] |
[503] |
[504] |
73 |
ELOA |
Elongin-A |
[505] |
[506] |
[507] |
[508] |
[509] |
[510] |
[511] |
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