REACTOME_TRANSCRIPTIONAL_REGULATION_BY_SMALL_RNAS			Return to index
Order	Gene	Description	ref_hepatocyte	HepG2	HepG2.C3A	HuH.7	SNU475	THLE	liver
1	RAN	GTP-binding nuclear protein Ran	[1]	-0.56[2]	-0.56[3]	-1.34[4]	-1.16[5]	-1.07[6]	-1.82[7]
2	POLR2L	DNA-directed RNA polymerases I, II, and III subunit RPABC5	[8]	-2.67[9]	-2.81[10]	-3.16[11]	-2.20[12]	-2.40[13]	-1.22[14]
3	SEC13	Protein SEC13 homolog	[15]	-1.15[16]	-0.90[17]	-0.84[18]	-1.73[19]	-1.72[20]	-1.44[21]
4	POLR2J	DNA-directed RNA polymerase II subunit RPB11-a	[22]	-3.36[23]	-3.21[24]	-3.04[25]	-3.43[26]	-3.24[27]	-2.97[28]
5	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	[29]	0.41[30]	0.24[31]	0.20[32]	-0.57[33]	0.16[34]	0.60[35]
6	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	[36]	-1.77[37]	-1.27[38]	-1.42[39]	-2.68[40]	-2.13[41]	-1.84[42]
7	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2	[43]	-1.46[44]	-1.35[45]	-2.29[46]	-2.61[47]	-2.00[48]	-0.95[49]
8	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4	[50]	-1.78[51]	-1.06[52]	-1.29[53]	-0.96[54]	-1.19[55]	-1.16[56]
9	POLR2G	DNA-directed RNA polymerase II subunit RPB7	[57]	-1.36[58]	-1.21[59]	-1.83[60]	-1.16[61]	-1.42[62]	-1.71[63]
10	POLR2C	DNA-directed RNA polymerase II subunit RPB3	[64]	0.63[65]	0.61[66]	-0.02[67]	-0.25[68]	-0.15[69]	-0.33[70]
11	POLR2I	DNA-directed RNA polymerase II subunit RPB9	[71]	-1.78[72]	-1.78[73]	-1.99[74]	-2.28[75]	-2.33[76]	-0.91[77]
12	RAE1	mRNA export factor	[78]	0.38[79]	-0.03[80]	-1.28[81]	0.57[82]	-0.25[83]	-0.90[84]
13	POLR2B	DNA-directed RNA polymerase II subunit RPB2	[85]	1.02[86]	1.28[87]	1.09[88]	1.10[89]	1.67[90]	1.07[91]
14	POLR2D	DNA-directed RNA polymerase II subunit RPB4	[92]	0.06[93]	0.06[94]	-0.77[95]	-0.41[96]	-0.32[97]	-0.32[98]
15	NUP88	Nuclear pore complex protein Nup88	[99]	-0.25[100]	0.15[101]	0.13[102]	-0.34[103]	0.03[104]	1.23[105]
16	SEH1L	Nucleoporin SEH1	[106]	0.03[107]	0.39[108]	0.72[109]	0.57[110]	-0.35[111]	0.30[112]
17	NUP35	Nucleoporin NUP53	[113]	-1.28[114]	-0.83[115]	-0.97[116]	-1.10[117]	-1.44[118]	-1.10[119]
18	POLR2A	DNA-directed RNA polymerase II subunit RPB1	[120]	2.54[121]	0.94[122]	1.82[123]	2.15[124]	2.40[125]	1.91[126]
19	NUP62	Nuclear pore glycoprotein p62	[127]	0.98[128]	0.46[129]	1.39[130]	1.20[131]	1.15[132]	0.54[133]
20	NUP85	Nuclear pore complex protein Nup85	[134]	0.55[135]	0.78[136]	0.90[137]	0.57[138]	0.64[139]	0.34[140]
21	AAAS	Aladin	[141]	0.07[142]	0.26[143]	-0.27[144]	0.21[145]	0.11[146]	-0.07[147]
22	IPO8	Importin-8	[148]	0.13[149]	0.75[150]	0.86[151]	0.40[152]	1.35[153]	1.14[154]
23	NUP50	Nuclear pore complex protein Nup50	[155]	0.58[156]	1.13[157]	1.41[158]	0.98[159]	1.33[160]	1.68[161]
24	RANBP2	E3 SUMO-protein ligase RanBP2	[162]	0.28[163]	1.84[164]	1.46[165]	1.53[166]	1.55[167]	3.07[168]
25	NUP93	Nuclear pore complex protein Nup93	[169]	1.48[170]	0.87[171]	0.73[172]	0.93[173]	1.10[174]	-0.39[175]
26	NUP98	Nuclear pore complex protein Nup98-Nup96	[176]	1.98[177]	1.53[178]	1.68[179]	2.22[180]	1.64[181]	1.98[182]
27	NUP54	Nucleoporin p54	[183]	-0.09[184]	0.42[185]	0.30[186]	0.32[187]	0.66[188]	0.13[189]
28	NUP107	Nuclear pore complex protein Nup107	[190]	0.31[191]	1.29[192]	1.15[193]	1.29[194]	1.07[195]	0.12[196]
29	NUP37	Nucleoporin Nup37	[197]	0.47[198]	0.62[199]	0.59[200]	0.44[201]	0.30[202]	-1.31[203]
30	TPR	Nucleoprotein TPR	[204]	0.44[205]	2.17[206]	2.36[207]	2.54[208]	2.63[209]	2.71[210]
31	NUP160	Nuclear pore complex protein Nup160	[211]	1.66[212]	1.68[213]	2.16[214]	1.17[215]	1.33[216]	1.59[217]
32	POM121	Nuclear envelope pore membrane protein POM 121	[218]	1.25[219]	1.47[220]	1.19[221]	1.54[222]	0.85[223]	1.41[224]
33	NUP133	Nuclear pore complex protein Nup133	[225]	0.99[226]	1.21[227]	2.05[228]	2.20[229]	1.41[230]	1.17[231]
34	NUP153	Nuclear pore complex protein Nup153	[232]	2.20[233]	2.27[234]	1.79[235]	3.25[236]	2.27[237]	2.06[238]
35	NUP43	Nucleoporin Nup43	[239]	1.72[240]	1.76[241]	1.40[242]	2.08[243]	1.67[244]	0.43[245]
36	NUP205	Nuclear pore complex protein Nup205	[246]	1.99[247]	1.77[248]	2.83[249]	2.77[250]	2.81[251]	1.63[252]
37	POM121C	Nuclear envelope pore membrane protein POM 121C	[253]	1.09[254]	0.22[255]	-0.23[256]	1.40[257]	0.69[258]	0.55[259]
38	NUP214	Nuclear pore complex protein Nup214	[260]	1.83[261]	1.01[262]	2.01[263]	2.18[264]	1.97[265]	1.87[266]
39	TNRC6A	Trinucleotide repeat-containing gene 6A protein	[267]	2.05[268]	2.57[269]	1.63[270]	2.28[271]	2.18[272]	3.11[273]
40	NUP188	Nucleoporin NUP188 homolog	[274]	3.07[275]	2.32[276]	2.84[277]	2.51[278]	3.55[279]	1.94[280]
41	NUP210	Nuclear pore membrane glycoprotein 210	[281]	3.51[282]	3.19[283]	4.17[284]	2.10[285]	0.35[286]	3.11[287]
42	NUP155	Nuclear pore complex protein Nup155	[288]	1.92[289]	1.40[290]	2.26[291]	2.47[292]	3.21[293]	1.86[294]
43	H4C3		[295]	[296]	[297]	[298]	[299]	[300]	[301]
44	H2BS1		[302]	[303]	[304]	[305]	[306]	[307]	[308]
45	H4C12		[309]	[310]	[311]	[312]	[313]	[314]	[315]
46	H4C13		[316]	[317]	[318]	[319]	[320]	[321]	[322]
47	H2BC9		[323]	[324]	[325]	[326]	[327]	[328]	[329]
48	H4-16		[330]	[331]	[332]	[333]	[334]	[335]	[336]
49	H2AZ2		[337]	[338]	[339]	[340]	[341]	[342]	[343]
50	H2BC3		[344]	[345]	[346]	[347]	[348]	[349]	[350]
51	H2AC7		[351]	[352]	[353]	[354]	[355]	[356]	[357]
52	H2BC1		[358]	[359]	[360]	[361]	[362]	[363]	[364]
53	H4C8		[365]	[366]	[367]	[368]	[369]	[370]	[371]
54	H2BC15		[372]	[373]	[374]	[375]	[376]	[377]	[378]
55	H4C4		[379]	[380]	[381]	[382]	[383]	[384]	[385]
56	H4C11		[386]	[387]	[388]	[389]	[390]	[391]	[392]
57	H3C10		[393]	[394]	[395]	[396]	[397]	[398]	[399]
58	H2AC6		[400]	[401]	[402]	[403]	[404]	[405]	[406]
59	H2BC10		[407]	[408]	[409]	[410]	[411]	[412]	[413]
60	NUP42		[414]	[415]	[416]	[417]	[418]	[419]	[420]
61	H2AZ1		[421]	[422]	[423]	[424]	[425]	[426]	[427]
62	H3C1		[428]	[429]	[430]	[431]	[432]	[433]	[434]
63	H2AX		[435]	[436]	[437]	[438]	[439]	[440]	[441]
64	H2AC4		[442]	[443]	[444]	[445]	[446]	[447]	[448]
65	H2BC17		[449]	[450]	[451]	[452]	[453]	[454]	[455]
66	NUP58	Nucleoporin p58/p45	[456]	[457]	[458]	[459]	[460]	[461]	[462]
67	H2BC21		[463]	[464]	[465]	[466]	[467]	[468]	[469]
68	H4C15		[470]	[471]	[472]	[473]	[474]	[475]	[476]
69	H2BC14		[477]	[478]	[479]	[480]	[481]	[482]	[483]
70	H2BC5		[484]	[485]	[486]	[487]	[488]	[489]	[490]
71	H2AC8		[491]	[492]	[493]	[494]	[495]	[496]	[497]
72	AGO1	Protein argonaute-1	[498]	[499]	[500]	[501]	[502]	[503]	[504]
73	H3C6		[505]	[506]	[507]	[508]	[509]	[510]	[511]
74	H3C14		[512]	[513]	[514]	[515]	[516]	[517]	[518]
75	H2BC11		[519]	[520]	[521]	[522]	[523]	[524]	[525]
76	H2BC12		[526]	[527]	[528]	[529]	[530]	[531]	[532]
77	H4C2		[533]	[534]	[535]	[536]	[537]	[538]	[539]
78	H3C8		[540]	[541]	[542]	[543]	[544]	[545]	[546]
79	H4C9		[547]	[548]	[549]	[550]	[551]	[552]	[553]
80	H3C4		[554]	[555]	[556]	[557]	[558]	[559]	[560]
81	H3C11		[561]	[562]	[563]	[564]	[565]	[566]	[567]
82	H2AC20		[568]	[569]	[570]	[571]	[572]	[573]	[574]
83	H3-3B		[575]	[576]	[577]	[578]	[579]	[580]	[581]
84	H2BC7		[582]	[583]	[584]	[585]	[586]	[587]	[588]
85	H3C3		[589]	[590]	[591]	[592]	[593]	[594]	[595]
86	H4C5		[596]	[597]	[598]	[599]	[600]	[601]	[602]
87	H2AB1		[603]	[604]	[605]	[606]	[607]	[608]	[609]
88	H3C12		[610]	[611]	[612]	[613]	[614]	[615]	[616]
89	H2BU1		[617]	[618]	[619]	[620]	[621]	[622]	[623]
90	H3C13		[624]	[625]	[626]	[627]	[628]	[629]	[630]
91	NDC1	Nucleoporin NDC1	[631]	[632]	[633]	[634]	[635]	[636]	[637]
92	H2BC6		[638]	[639]	[640]	[641]	[642]	[643]	[644]
93	H3C15		[645]	[646]	[647]	[648]	[649]	[650]	[651]
94	H3-3A		[652]	[653]	[654]	[655]	[656]	[657]	[658]
95	H3C7		[659]	[660]	[661]	[662]	[663]	[664]	[665]
96	H4C6		[666]	[667]	[668]	[669]	[670]	[671]	[672]
97	H4C14		[673]	[674]	[675]	[676]	[677]	[678]	[679]
98	H2AJ		[680]	[681]	[682]	[683]	[684]	[685]	[686]
99	H2BC4		[687]	[688]	[689]	[690]	[691]	[692]	[693]
100	H3C2		[694]	[695]	[696]	[697]	[698]	[699]	[700]
101	H4C1		[701]	[702]	[703]	[704]	[705]	[706]	[707]
102	H2BC8		[708]	[709]	[710]	[711]	[712]	[713]	[714]
103	H2AC14		[715]	[716]	[717]	[718]	[719]	[720]	[721]
104	AGO2	Protein argonaute-2	[722]	[723]	[724]	[725]	[726]	[727]	[728]
105	H2BC13		[729]	[730]	[731]	[732]	[733]	[734]	[735]