REACTOME_TP53_REGULATES_TRANSCRIPTION_OF_DNA_REPAIR_GENES |
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Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[1] |
-2.68[2] |
-2.74[3] |
-3.07[4] |
-2.22[5] |
-2.38[6] |
-1.02[7] |
2 |
JUN |
Transcription factor AP-1 |
[8] |
-0.69[9] |
-2.29[10] |
-2.11[11] |
-1.73[12] |
-1.25[13] |
-1.49[14] |
3 |
FOS |
Proto-oncogene c-Fos |
[15] |
-6.22[16] |
-5.01[17] |
-5.76[18] |
-6.19[19] |
-5.22[20] |
-0.98[21] |
4 |
POLR2J |
DNA-directed RNA polymerase II subunit RPB11-a |
[22] |
-3.37[23] |
-3.14[24] |
-2.95[25] |
-3.45[26] |
-3.21[27] |
-2.77[28] |
5 |
SSRP1 |
FACT complex subunit SSRP1 |
[29] |
0.44[30] |
-0.04[31] |
0.17[32] |
0.16[33] |
0.56[34] |
-1.23[35] |
6 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[36] |
0.40[37] |
0.30[38] |
0.30[39] |
-0.59[40] |
0.18[41] |
0.80[42] |
7 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[43] |
-1.78[44] |
-1.21[45] |
-1.32[46] |
-2.70[47] |
-2.10[48] |
-1.64[49] |
8 |
TCEA1 |
Transcription elongation factor A protein 1 |
[50] |
0.13[51] |
0.64[52] |
-0.02[53] |
0.83[54] |
0.56[55] |
0.60[56] |
9 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[57] |
-1.47[58] |
-1.29[59] |
-2.19[60] |
-2.63[61] |
-1.98[62] |
-0.75[63] |
10 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[64] |
-1.79[65] |
-1.00[66] |
-1.19[67] |
-0.98[68] |
-1.16[69] |
-0.96[70] |
11 |
POLR2G |
DNA-directed RNA polymerase II subunit RPB7 |
[71] |
-1.37[72] |
-1.14[73] |
-1.74[74] |
-1.18[75] |
-1.40[76] |
-1.51[77] |
12 |
SUPT5H |
Transcription elongation factor SPT5 |
[78] |
0.09[79] |
-0.28[80] |
0.60[81] |
0.42[82] |
0.16[83] |
-0.02[84] |
13 |
GTF2F2 |
General transcription factor IIF subunit 2 |
[85] |
-2.15[86] |
-1.57[87] |
-1.34[88] |
-2.15[89] |
-2.01[90] |
-2.26[91] |
14 |
SUPT4H1 |
Transcription elongation factor SPT4 |
[92] |
-0.44[93] |
-0.41[94] |
-0.92[95] |
-1.67[96] |
-1.17[97] |
-1.50[98] |
15 |
POLR2C |
DNA-directed RNA polymerase II subunit RPB3 |
[99] |
0.62[100] |
0.67[101] |
0.08[102] |
-0.26[103] |
-0.12[104] |
-0.13[105] |
16 |
SUPT16H |
FACT complex subunit SPT16 |
[106] |
1.41[107] |
0.64[108] |
1.31[109] |
1.46[110] |
1.56[111] |
0.27[112] |
17 |
CCNH |
Cyclin-H |
[113] |
-1.87[114] |
-1.07[115] |
-1.77[116] |
-1.80[117] |
-0.50[118] |
-0.60[119] |
18 |
POLR2I |
DNA-directed RNA polymerase II subunit RPB9 |
[120] |
-1.79[121] |
-1.72[122] |
-1.89[123] |
-2.30[124] |
-2.30[125] |
-0.71[126] |
19 |
ERCC3 |
TFIIH basal transcription factor complex helicase XPB subunit |
[127] |
-0.32[128] |
-0.12[129] |
-0.80[130] |
-0.47[131] |
-0.12[132] |
-0.38[133] |
20 |
GTF2F1 |
General transcription factor IIF subunit 1 |
[134] |
0.19[135] |
-0.28[136] |
1.10[137] |
-0.42[138] |
0.00[139] |
-0.95[140] |
21 |
CDK9 |
Cyclin-dependent kinase 9 |
[141] |
-0.58[142] |
-1.00[143] |
-1.01[144] |
-0.18[145] |
-0.57[146] |
0.47[147] |
22 |
CDK7 |
Cyclin-dependent kinase 7 |
[148] |
-0.85[149] |
0.11[150] |
-0.26[151] |
-0.59[152] |
-1.00[153] |
-2.03[154] |
23 |
CCNK |
Cyclin-K |
[155] |
-0.05[156] |
-1.07[157] |
-0.97[158] |
0.38[159] |
-0.22[160] |
-1.73[161] |
24 |
POLR2B |
DNA-directed RNA polymerase II subunit RPB2 |
[162] |
1.02[163] |
1.34[164] |
1.19[165] |
1.08[166] |
1.69[167] |
1.27[168] |
25 |
GTF2H2 |
General transcription factor IIH subunit 2 |
[169] |
-5.60[170] |
-4.71[171] |
-5.02[172] |
-5.21[173] |
-6.55[174] |
-4.35[175] |
26 |
POLR2D |
DNA-directed RNA polymerase II subunit RPB4 |
[176] |
0.05[177] |
0.13[178] |
-0.67[179] |
-0.43[180] |
-0.29[181] |
-0.12[182] |
27 |
GTF2H1 |
General transcription factor IIH subunit 1 |
[183] |
0.02[184] |
0.15[185] |
0.00[186] |
0.57[187] |
0.03[188] |
0.48[189] |
28 |
POLR2A |
DNA-directed RNA polymerase II subunit RPB1 |
[190] |
2.53[191] |
1.01[192] |
1.92[193] |
2.13[194] |
2.43[195] |
2.11[196] |
29 |
ATF2 |
Cyclic AMP-dependent transcription factor ATF-2 |
[197] |
0.44[198] |
1.43[199] |
1.57[200] |
0.76[201] |
0.44[202] |
1.34[203] |
30 |
GTF2H4 |
General transcription factor IIH subunit 4 |
[204] |
-0.45[205] |
-0.04[206] |
-0.04[207] |
0.29[208] |
-0.57[209] |
-1.34[210] |
31 |
MLH1 |
DNA mismatch repair protein Mlh1 |
[211] |
0.65[212] |
0.71[213] |
1.37[214] |
0.12[215] |
0.68[216] |
0.75[217] |
32 |
DDB2 |
DNA damage-binding protein 2 |
[218] |
0.88[219] |
0.34[220] |
-1.06[221] |
-1.63[222] |
-1.14[223] |
-1.20[224] |
33 |
MNAT1 |
CDK-activating kinase assembly factor MAT1 |
[225] |
-0.82[226] |
0.43[227] |
-0.48[228] |
0.36[229] |
-0.19[230] |
-0.63[231] |
34 |
TP53 |
Cellular tumor antigen p53 |
[232] |
1.43[233] |
0.94[234] |
1.61[235] |
1.27[236] |
0.84[237] |
0.28[238] |
35 |
PMS2 |
Mismatch repair endonuclease PMS2 |
[239] |
-1.62[240] |
-1.94[241] |
-1.13[242] |
-0.62[243] |
-1.02[244] |
-1.09[245] |
36 |
GTF2H3 |
General transcription factor IIH subunit 3 |
[246] |
1.00[247] |
1.37[248] |
1.24[249] |
1.33[250] |
1.02[251] |
0.45[252] |
37 |
ERCC2 |
TFIIH basal transcription factor complex helicase XPD subunit |
[253] |
0.92[254] |
0.91[255] |
1.26[256] |
1.29[257] |
1.12[258] |
-0.51[259] |
38 |
CDK12 |
Cyclin-dependent kinase 12 |
[260] |
2.38[261] |
1.48[262] |
1.74[263] |
2.27[264] |
1.45[265] |
2.11[266] |
39 |
MSH2 |
DNA mismatch repair protein Msh2 |
[267] |
0.62[268] |
1.85[269] |
1.21[270] |
2.11[271] |
1.38[272] |
-0.37[273] |
40 |
CTDP1 |
RNA polymerase II subunit A C-terminal domain phosphatase |
[274] |
1.14[275] |
0.32[276] |
0.23[277] |
0.41[278] |
0.54[279] |
0.64[280] |
41 |
CCNT1 |
Cyclin-T1 |
[281] |
0.83[282] |
1.72[283] |
1.59[284] |
1.89[285] |
1.76[286] |
1.94[287] |
42 |
GTF2H5 |
General transcription factor IIH subunit 5 |
[288] |
1.39[289] |
1.74[290] |
1.47[291] |
1.25[292] |
1.32[293] |
1.35[294] |
43 |
CHEK1 |
Serine/threonine-protein kinase Chk1 |
[295] |
1.33[296] |
1.64[297] |
1.12[298] |
2.13[299] |
2.26[300] |
-1.71[301] |
44 |
CDK13 |
Cyclin-dependent kinase 13 |
[302] |
1.02[303] |
1.22[304] |
1.83[305] |
2.04[306] |
1.72[307] |
3.02[308] |
45 |
ELL |
RNA polymerase II elongation factor ELL |
[309] |
0.68[310] |
0.79[311] |
0.92[312] |
0.14[313] |
0.87[314] |
0.80[315] |
46 |
MDC1 |
Mediator of DNA damage checkpoint protein 1 |
[316] |
2.29[317] |
2.63[318] |
2.88[319] |
2.87[320] |
2.70[321] |
1.77[322] |
47 |
CCNT2 |
Cyclin-T2 |
[323] |
1.07[324] |
2.85[325] |
2.24[326] |
2.43[327] |
1.93[328] |
3.22[329] |
48 |
BRCA1 |
Breast cancer type 1 susceptibility protein |
[330] |
1.47[331] |
2.66[332] |
2.96[333] |
2.12[334] |
2.55[335] |
1.99[336] |
49 |
FANCI |
Fanconi anemia group I protein |
[337] |
2.23[338] |
2.61[339] |
3.02[340] |
3.32[341] |
3.53[342] |
0.16[343] |
50 |
FANCC |
Fanconi anemia group C protein |
[344] |
0.81[345] |
1.08[346] |
-0.62[347] |
1.51[348] |
1.59[349] |
3.25[350] |
51 |
ATR |
Serine/threonine-protein kinase ATR |
[351] |
0.89[352] |
1.83[353] |
1.82[354] |
2.50[355] |
2.37[356] |
3.87[357] |
52 |
RAD51D |
DNA repair protein RAD51 homolog 4 |
[358] |
0.52[359] |
0.48[360] |
1.12[361] |
1.03[362] |
0.37[363] |
0.08[364] |
53 |
FANCD2 |
Fanconi anemia group D2 protein |
[365] |
2.23[366] |
2.32[367] |
3.30[368] |
2.39[369] |
2.99[370] |
0.34[371] |
54 |
ATM |
Serine-protein kinase ATM |
[372] |
2.83[373] |
4.37[374] |
4.01[375] |
4.13[376] |
3.52[377] |
5.31[378] |
55 |
ENSG00000288631 |
[379] |
[380] |
[381] |
[382] |
[383] |
[384] |
[385] |
56 |
NELFA |
Negative elongation factor A |
[386] |
[387] |
[388] |
[389] |
[390] |
[391] |
[392] |
57 |
ENSG00000288616 |
[393] |
[394] |
[395] |
[396] |
[397] |
[398] |
[399] |
58 |
NELFB |
Negative elongation factor B |
[400] |
[401] |
[402] |
[403] |
[404] |
[405] |
[406] |
59 |
ELOA2 |
Elongin-A2 |
[407] |
[408] |
[409] |
[410] |
[411] |
[412] |
[413] |
60 |
ELOC |
Elongin-C |
[414] |
[415] |
[416] |
[417] |
[418] |
[419] |
[420] |
61 |
ENSG00000288607 |
[421] |
[422] |
[423] |
[424] |
[425] |
[426] |
[427] |
62 |
ELOB |
Elongin-B |
[428] |
[429] |
[430] |
[431] |
[432] |
[433] |
[434] |
63 |
ELOA |
Elongin-A |
[435] |
[436] |
[437] |
[438] |
[439] |
[440] |
[441] |
64 |
NELFCD |
Negative elongation factor C/D |
[442] |
[443] |
[444] |
[445] |
[446] |
[447] |
[448] |
65 |
NELFE |
Negative elongation factor E |
[449] |
[450] |
[451] |
[452] |
[453] |
[454] |
[455] |
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