REACTOME_RRNA_MODIFICATION_IN_THE_NUCLEUS_AND_CYTOSOL | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | RPS6 | 40S ribosomal protein S6 | [1] | [2] | [3] | [4] | [5] | [6] | [7] |
2 | RPS2 | 40S ribosomal protein S2 | [8] | [9] | [10] | [11] | [12] | [13] | [14] |
3 | RPS7 | 40S ribosomal protein S7 | [15] | [16] | [17] | [18] | [19] | [20] | [21] |
4 | RPS9 | 40S ribosomal protein S9 | [22] | [23] | [24] | [25] | [26] | [27] | [28] |
5 | RPS14 | 40S ribosomal protein S14 | [29] | [30] | [31] | [32] | [33] | [34] | [35] |
6 | TRMT112 | Multifunctional methyltransferase subunit TRM112-like protein | [36] | -0.63[37] | -0.56[38] | -0.85[39] | -0.39[40] | -0.69[41] | -0.72[42] |
7 | NOP10 | H/ACA ribonucleoprotein complex subunit 3 | [43] | 0.63[44] | 0.43[45] | -0.35[46] | 0.31[47] | 0.50[48] | 1.10[49] |
8 | NHP2 | H/ACA ribonucleoprotein complex subunit 2 | [50] | 0.85[51] | 0.59[52] | 1.26[53] | 0.66[54] | 1.12[55] | 1.07[56] |
9 | IMP3 | U3 small nucleolar ribonucleoprotein protein IMP3 | [57] | 1.05[58] | 0.91[59] | 1.34[60] | 0.00[61] | 0.66[62] | 2.44[63] |
10 | NOP56 | Nucleolar protein 56 | [64] | 3.67[65] | 3.50[66] | 2.67[67] | 2.89[68] | 2.70[69] | 1.78[70] |
11 | NOP58 | Nucleolar protein 58 | [71] | 1.05[72] | 2.27[73] | 1.68[74] | 2.15[75] | 2.03[76] | 1.80[77] |
12 | IMP4 | U3 small nucleolar ribonucleoprotein protein IMP4 | [78] | 1.33[79] | 1.27[80] | 0.65[81] | 0.65[82] | 0.73[83] | 1.79[84] |
13 | MPHOSPH | U3 small nucleolar ribonucleoprotein protein MPP10 | [85] | 1.06[86] | 2.23[87] | 1.37[88] | 0.83[89] | 0.39[90] | 0.92[91] |
14 | FBL | rRNA 2'-O-methyltransferase fibrillarin | [92] | 2.50[93] | 2.40[94] | 3.14[95] | 1.95[96] | 2.34[97] | 0.35[98] |
15 | EMG1 | Ribosomal RNA small subunit methyltransferase NEP1 | [99] | 1.74[100] | 1.96[101] | 1.63[102] | 0.73[103] | 1.61[104] | 0.70[105] |
16 | WDR43 | WD repeat-containing protein 43 | [106] | 2.46[107] | 3.10[108] | 2.14[109] | 2.26[110] | 2.38[111] | 2.51[112] |
17 | DDX47 | Probable ATP-dependent RNA helicase DDX47 | [113] | 1.64[114] | 1.55[115] | 1.86[116] | 1.65[117] | 2.45[118] | 2.33[119] |
18 | RRP36 | Ribosomal RNA processing protein 36 homolog | [120] | 2.27[121] | 1.60[122] | 0.95[123] | 2.79[124] | 2.26[125] | 1.60[126] |
19 | DKC1 | H/ACA ribonucleoprotein complex subunit 4 | [127] | 3.14[128] | 2.96[129] | 2.79[130] | 2.74[131] | 2.77[132] | 2.08[133] |
20 | UTP6 | U3 small nucleolar RNA-associated protein 6 homolog | [134] | 2.00[135] | 1.93[136] | 2.25[137] | 2.53[138] | 2.36[139] | 1.95[140] |
21 | RCL1 | RNA 3'-terminal phosphate cyclase-like protein | [141] | 0.91[142] | 0.30[143] | -0.71[144] | -0.41[145] | 0.58[146] | 3.56[147] |
22 | UTP18 | U3 small nucleolar RNA-associated protein 18 homolog | [148] | 2.76[149] | 2.92[150] | 2.63[151] | 1.96[152] | 2.47[153] | 1.76[154] |
23 | NOP14 | Nucleolar protein 14 | [155] | 2.67[156] | 2.09[157] | 3.11[158] | 2.73[159] | 2.26[160] | 2.63[161] |
24 | DDX49 | Probable ATP-dependent RNA helicase DDX49 | [162] | 1.89[163] | 2.14[164] | 3.47[165] | 1.82[166] | 2.55[167] | 2.43[168] |
25 | UTP3 | Something about silencing protein 10 | [169] | 1.22[170] | 0.90[171] | 1.57[172] | 1.49[173] | 2.44[174] | 1.45[175] |
26 | DCAF13 | DDB1- and CUL4-associated factor 13 | [176] | 2.42[177] | 3.17[178] | 2.54[179] | 3.55[180] | 2.53[181] | 2.54[182] |
27 | NOP2 | Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase | [183] | 3.26[184] | 2.73[185] | 2.92[186] | 2.56[187] | 3.23[188] | 2.29[189] |
28 | NOL11 | Nucleolar protein 11 | [190] | 3.14[191] | 3.78[192] | 3.58[193] | 3.52[194] | 3.15[195] | 2.93[196] |
29 | WDR46 | WD repeat-containing protein 46 | [197] | 3.18[198] | 2.75[199] | 2.24[200] | 3.24[201] | 2.47[202] | 2.93[203] |
30 | GAR1 | H/ACA ribonucleoprotein complex subunit 1 | [204] | 1.30[205] | 0.69[206] | 0.53[207] | 1.14[208] | 1.42[209] | -0.36[210] |
31 | FCF1 | rRNA-processing protein FCF1 homolog | [211] | 2.40[212] | 2.82[213] | 2.13[214] | 3.27[215] | 3.05[216] | 1.25[217] |
32 | RRP9 | U3 small nucleolar RNA-interacting protein 2 | [218] | 2.66[219] | 2.05[220] | 2.40[221] | 1.41[222] | 2.04[223] | 1.34[224] |
33 | PNO1 | RNA-binding protein PNO1 | [225] | 2.91[226] | 2.62[227] | 1.78[228] | 2.67[229] | 2.42[230] | 2.10[231] |
34 | WDR3 | WD repeat-containing protein 3 | [232] | 3.09[233] | 2.57[234] | 3.21[235] | 3.27[236] | 3.30[237] | 3.67[238] |
35 | WDR75 | WD repeat-containing protein 75 | [239] | 2.59[240] | 3.64[241] | 3.64[242] | 3.26[243] | 3.60[244] | 2.91[245] |
36 | KRR1 | KRR1 small subunit processome component homolog | [246] | 1.50[247] | 2.60[248] | 2.12[249] | 2.66[250] | 2.65[251] | 2.57[252] |
37 | DIMT1 | Probable dimethyladenosine transferase | [253] | 2.02[254] | 1.87[255] | 2.32[256] | 2.44[257] | 2.85[258] | 2.41[259] |
38 | TBL3 | Transducin beta-like protein 3 | [260] | 2.95[261] | 2.41[262] | 3.16[263] | 2.32[264] | 3.04[265] | 3.11[266] |
39 | UTP14A | U3 small nucleolar RNA-associated protein 14 homolog A | [267] | 2.55[268] | 1.90[269] | 2.76[270] | 2.96[271] | 2.64[272] | 1.82[273] |
40 | RRP7A | Ribosomal RNA-processing protein 7 homolog A | [274] | 3.02[275] | 2.47[276] | 3.34[277] | 3.86[278] | 3.61[279] | 3.07[280] |
41 | NOC4L | Nucleolar complex protein 4 homolog | [281] | 2.05[282] | 1.53[283] | 1.48[284] | 2.29[285] | 1.95[286] | 2.04[287] |
42 | BMS1 | Ribosome biogenesis protein BMS1 homolog | [288] | 3.64[289] | 3.96[290] | 4.01[291] | 4.67[292] | 4.41[293] | 4.27[294] |
43 | NAT10 | RNA cytidine acetyltransferase | [295] | 4.24[296] | 3.48[297] | 3.74[298] | 3.83[299] | 3.00[300] | 3.58[301] |
44 | THUMPD1 | THUMP domain-containing protein 1 | [302] | 3.35[303] | 3.77[304] | 3.42[305] | 2.87[306] | 3.37[307] | 4.46[308] |
45 | DDX52 | Probable ATP-dependent RNA helicase DDX52 | [309] | 2.45[310] | 2.48[311] | 3.27[312] | 3.94[313] | 3.89[314] | 3.63[315] |
46 | PDCD11 | Protein RRP5 homolog | [316] | 5.12[317] | 4.67[318] | 5.45[319] | 4.12[320] | 4.85[321] | 4.86[322] |
47 | NOL6 | Nucleolar protein 6 | [323] | 4.16[324] | 3.31[325] | 3.94[326] | 3.81[327] | 4.00[328] | 4.50[329] |
48 | HEATR1 | HEAT repeat-containing protein 1 | [330] | 4.43[331] | 4.21[332] | 5.22[333] | 5.53[334] | 4.70[335] | 4.93[336] |
49 | PWP2 | Periodic tryptophan protein 2 homolog | [337] | 4.08[338] | 3.62[339] | 3.65[340] | 4.70[341] | 4.29[342] | 3.97[343] |
50 | WDR36 | WD repeat-containing protein 36 | [344] | 3.60[345] | 4.27[346] | 3.67[347] | 3.95[348] | 4.83[349] | 5.55[350] |
51 | DHX37 | Probable ATP-dependent RNA helicase DHX37 | [351] | 4.55[352] | 3.87[353] | 4.36[354] | 4.12[355] | 3.67[356] | 3.41[357] |
52 | UTP15 | U3 small nucleolar RNA-associated protein 15 homolog | [358] | 2.69[359] | 2.93[360] | 2.82[361] | 3.66[362] | 3.63[363] | 3.59[364] |
53 | UTP14C | U3 small nucleolar RNA-associated protein 14 homolog C | [365] | 2.98[366] | 3.96[367] | 4.57[368] | 3.46[369] | 3.87[370] | 5.24[371] |
54 | UTP20 | Small subunit processome component 20 homolog | [372] | 4.92[373] | 5.44[374] | 5.50[375] | 5.84[376] | 5.56[377] | 6.01[378] |
55 | UTP4 | U3 small nucleolar RNA-associated protein 4 homolog | [379] | [380] | [381] | [382] | [383] | [384] | [385] |
56 | UTP11 | Probable U3 small nucleolar RNA-associated protein 11 | [386] | [387] | [388] | [389] | [390] | [391] | [392] |
57 | TSR3 | Ribosome biogenesis protein TSR3 homolog | [393] | [394] | [395] | [396] | [397] | [398] | [399] |
58 | UTP25 | [400] | [401] | [402] | [403] | [404] | [405] | [406] | |
59 | BUD23 | Probable 18S rRNA (guanine-N(7))-methyltransferase | [407] | [408] | [409] | [410] | [411] | [412] | [413] |
60 | SNU13 | NHP2-like protein 1 | [414] | [415] | [416] | [417] | [418] | [419] | [420] |