REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION_TERMINATION | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | SNRPD3 | Small nuclear ribonucleoprotein Sm D3 | [1] | -2.27[2] | -2.47[3] | -2.55[4] | -2.25[5] | -2.45[6] | -2.35[7] |
2 | U2AF1 | Splicing factor U2AF 35 kDa subunit | [8] | -1.95[9] | -2.61[10] | -2.95[11] | -2.09[12] | -2.26[13] | -3.25[14] |
3 | SNRPG | Small nuclear ribonucleoprotein G | [15] | -1.36[16] | -0.99[17] | -1.83[18] | -2.19[19] | -1.93[20] | -1.27[21] |
4 | SRSF5 | Serine/arginine-rich splicing factor 5 | [22] | -1.53[23] | -1.20[24] | -1.61[25] | -1.72[26] | -1.38[27] | -0.22[28] |
5 | SNRPF | Small nuclear ribonucleoprotein F | [29] | -1.98[30] | -2.19[31] | -2.21[32] | -2.67[33] | -2.63[34] | -2.80[35] |
6 | SNRPB | Small nuclear ribonucleoprotein-associated proteins B and B' | [36] | 1.06[37] | 0.81[38] | -0.05[39] | 0.26[40] | -0.10[41] | -1.39[42] |
7 | SRSF9 | Serine/arginine-rich splicing factor 9 | [43] | -1.41[44] | -1.71[45] | -1.79[46] | -1.48[47] | -1.56[48] | -1.40[49] |
8 | SRSF2 | Serine/arginine-rich splicing factor 2 | [50] | 0.02[51] | 0.58[52] | -0.06[53] | -0.07[54] | 0.00[55] | 0.25[56] |
9 | SRSF3 | Serine/arginine-rich splicing factor 3 | [57] | 0.75[58] | 0.77[59] | 0.81[60] | 0.59[61] | 0.65[62] | 0.55[63] |
10 | DDX39B | Spliceosome RNA helicase DDX39B | [64] | -9.57[65] | -9.61[66] | -10.05[67] | -8.89[68] | -8.12[69] | -10.29[70] |
11 | EIF4A3 | Eukaryotic initiation factor 4A-III | [71] | 0.12[72] | -0.80[73] | -0.49[74] | -0.59[75] | -0.45[76] | -0.90[77] |
12 | SRSF1 | Serine/arginine-rich splicing factor 1 | [78] | 1.08[79] | 1.23[80] | 1.09[81] | 0.99[82] | 1.04[83] | 1.56[84] |
13 | ALYREF | THO complex subunit 4 | [85] | -0.14[86] | -0.83[87] | -1.21[88] | -0.97[89] | -0.88[90] | -3.07[91] |
14 | SARNP | SAP domain-containing ribonucleoprotein | [92] | -1.12[93] | -1.04[94] | -0.77[95] | -1.17[96] | -0.68[97] | -1.62[98] |
15 | THOC7 | THO complex subunit 7 homolog | [99] | -1.76[100] | -1.61[101] | -2.56[102] | -1.68[103] | -1.21[104] | -1.44[105] |
16 | LSM10 | U7 snRNA-associated Sm-like protein LSm10 | [106] | -1.56[107] | -1.78[108] | -2.53[109] | -2.52[110] | -1.88[111] | -1.35[112] |
17 | SRSF11 | Serine/arginine-rich splicing factor 11 | [113] | -0.34[114] | 0.87[115] | 0.11[116] | 0.66[117] | 0.71[118] | 1.00[119] |
18 | MAGOH | Protein mago nashi homolog | [120] | -1.67[121] | -1.91[122] | -2.03[123] | -1.95[124] | -1.82[125] | -2.39[126] |
19 | U2AF2 | Splicing factor U2AF 65 kDa subunit | [127] | 1.05[128] | 0.38[129] | 1.04[130] | 0.86[131] | 0.92[132] | -0.71[133] |
20 | RNPS1 | RNA-binding protein with serine-rich domain 1 | [134] | 1.06[135] | 0.34[136] | 0.96[137] | 0.14[138] | 0.74[139] | -0.32[140] |
21 | THOC3 | THO complex subunit 3 | [141] | -2.82[142] | -3.64[143] | -2.14[144] | -2.87[145] | -2.85[146] | -3.36[147] |
22 | NCBP2 | Nuclear cap-binding protein subunit 2 | [148] | -0.09[149] | -0.02[150] | 0.14[151] | -0.37[152] | -0.21[153] | -0.49[154] |
23 | PAPOLA | Poly(A) polymerase alpha | [155] | 1.03[156] | 1.68[157] | 1.78[158] | 2.11[159] | 1.73[160] | 1.76[161] |
24 | SRSF7 | Serine/arginine-rich splicing factor 7 | [162] | 0.66[163] | 0.85[164] | 0.63[165] | 0.55[166] | 0.67[167] | 1.04[168] |
25 | SRSF6 | Serine/arginine-rich splicing factor 6 | [169] | 1.69[170] | 2.21[171] | 1.29[172] | 1.39[173] | 1.29[174] | 2.37[175] |
26 | SNRPE | Small nuclear ribonucleoprotein E | [176] | 0.42[177] | 0.43[178] | 0.64[179] | 0.85[180] | 0.26[181] | 0.35[182] |
27 | SRSF4 | Serine/arginine-rich splicing factor 4 | [183] | 0.11[184] | 0.18[185] | 0.51[186] | 0.27[187] | 0.61[188] | 0.80[189] |
28 | DDX39A | ATP-dependent RNA helicase DDX39A | [190] | 0.13[191] | -0.23[192] | 0.71[193] | -0.09[194] | 0.71[195] | 0.11[196] |
29 | SLBP | Histone RNA hairpin-binding protein | [197] | 0.79[198] | 0.20[199] | 1.06[200] | 1.29[201] | 1.28[202] | -0.02[203] |
30 | CASC3 | Protein CASC3 | [204] | 1.24[205] | -0.15[206] | 1.12[207] | 0.88[208] | 0.98[209] | 0.57[210] |
31 | RBM8A | RNA-binding protein 8A | [211] | 0.53[212] | 0.05[213] | -0.02[214] | 1.11[215] | 0.73[216] | 0.94[217] |
32 | NUDT21 | Cleavage and polyadenylation specificity factor subunit 5 | [218] | 1.82[219] | 2.15[220] | 1.87[221] | 1.63[222] | 1.92[223] | 0.96[224] |
33 | CHTOP | Chromatin target of PRMT1 protein | [225] | 0.40[226] | 0.40[227] | 1.12[228] | 0.65[229] | 0.99[230] | -0.16[231] |
34 | FIP1L1 | Pre-mRNA 3'-end-processing factor FIP1 | [232] | -0.36[233] | -0.45[234] | -0.24[235] | 0.57[236] | 0.25[237] | -0.01[238] |
35 | ZC3H11A | Zinc finger CCCH domain-containing protein 11A | [239] | 0.45[240] | 1.02[241] | 1.55[242] | 1.74[243] | 1.50[244] | 2.39[245] |
36 | PABPN1 | Polyadenylate-binding protein 2 | [246] | -0.12[247] | -0.78[248] | -0.59[249] | -1.22[250] | -1.11[251] | -2.43[252] |
37 | CSTF3 | Cleavage stimulation factor subunit 3 | [253] | 0.15[254] | 0.68[255] | 0.74[256] | 0.08[257] | -0.14[258] | 0.36[259] |
38 | DHX38 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | [260] | 1.24[261] | 0.97[262] | 1.10[263] | 1.04[264] | 1.08[265] | 0.96[266] |
39 | SRRM1 | Serine/arginine repetitive matrix protein 1 | [267] | 0.48[268] | 1.60[269] | 1.18[270] | 1.33[271] | 1.24[272] | 1.48[273] |
40 | CPSF3 | Cleavage and polyadenylation specificity factor subunit 3 | [274] | 0.60[275] | 0.64[276] | 0.56[277] | 1.17[278] | 0.68[279] | 0.42[280] |
41 | CPSF7 | Cleavage and polyadenylation specificity factor subunit 7 | [281] | 1.11[282] | 0.93[283] | 1.51[284] | 1.51[285] | 1.65[286] | 1.23[287] |
42 | SLU7 | Pre-mRNA-splicing factor SLU7 | [288] | -0.01[289] | 0.31[290] | 0.27[291] | 0.71[292] | 0.71[293] | 0.52[294] |
43 | FYTTD1 | UAP56-interacting factor | [295] | 0.12[296] | 0.55[297] | 0.26[298] | 1.19[299] | 1.68[300] | 1.92[301] |
44 | POLDIP3 | Polymerase delta-interacting protein 3 | [302] | 1.78[303] | 1.55[304] | 1.74[305] | 1.17[306] | 1.55[307] | 1.36[308] |
45 | CPSF2 | Cleavage and polyadenylation specificity factor subunit 2 | [309] | 0.90[310] | 1.08[311] | 1.13[312] | 2.04[313] | 1.94[314] | 1.77[315] |
46 | THOC5 | THO complex subunit 5 homolog | [316] | 1.10[317] | 0.97[318] | 2.03[319] | 0.76[320] | 0.32[321] | 0.63[322] |
47 | CSTF1 | Cleavage stimulation factor subunit 1 | [323] | 1.34[324] | 0.79[325] | 0.45[326] | 1.11[327] | 0.42[328] | 0.86[329] |
48 | SYMPK | Symplekin | [330] | 2.03[331] | 1.39[332] | 2.51[333] | 1.41[334] | 1.86[335] | 1.23[336] |
49 | THOC6 | THO complex subunit 6 homolog | [337] | 0.39[338] | 0.09[339] | -0.41[340] | -0.32[341] | -0.53[342] | -0.60[343] |
50 | CPSF4 | Cleavage and polyadenylation specificity factor subunit 4 | [344] | 0.90[345] | 0.27[346] | 0.53[347] | 0.28[348] | 0.14[349] | -0.75[350] |
51 | WDR33 | pre-mRNA 3' end processing protein WDR33 | [351] | 2.06[352] | 2.00[353] | 1.90[354] | 1.72[355] | 1.67[356] | 2.63[357] |
52 | CPSF1 | Cleavage and polyadenylation specificity factor subunit 1 | [358] | 2.33[359] | 1.99[360] | 2.51[361] | 1.86[362] | 1.28[363] | 1.82[364] |
53 | THOC1 | THO complex subunit 1 | [365] | -0.55[366] | 0.60[367] | 0.48[368] | 1.14[369] | 0.32[370] | 0.10[371] |
54 | UPF3B | Regulator of nonsense transcripts 3B | [372] | -1.96[373] | -0.54[374] | -0.27[375] | 0.60[376] | 0.09[377] | -0.32[378] |
55 | NCBP1 | Nuclear cap-binding protein subunit 1 | [379] | 1.63[380] | 1.45[381] | 1.35[382] | 2.25[383] | 2.71[384] | 2.09[385] |
56 | THOC2 | THO complex subunit 2 | [386] | 0.77[387] | 2.11[388] | 2.71[389] | 2.18[390] | 1.85[391] | 2.76[392] |
57 | CSTF2 | Cleavage stimulation factor subunit 2 | [393] | 1.11[394] | 0.27[395] | 0.83[396] | 1.53[397] | 1.30[398] | 0.14[399] |
58 | PCF11 | Pre-mRNA cleavage complex 2 protein Pcf11 | [400] | 0.46[401] | 1.56[402] | 1.56[403] | 1.55[404] | 1.12[405] | 2.68[406] |
59 | CDC40 | Pre-mRNA-processing factor 17 | [407] | 0.69[408] | 1.04[409] | 1.30[410] | 1.31[411] | 1.69[412] | 2.09[413] |
60 | CLP1 | Polyribonucleotide 5'-hydroxyl-kinase Clp1 | [414] | 0.98[415] | 0.15[416] | 1.76[417] | 0.42[418] | 0.60[419] | 0.50[420] |
61 | CSTF2T | Cleavage stimulation factor subunit 2 tau variant | [421] | 0.27[422] | -3.72[423] | 0.99[424] | 2.21[425] | 2.27[426] | 1.60[427] |
62 | MAGOHB | Protein mago nashi homolog 2 | [428] | -0.14[429] | 0.18[430] | 0.77[431] | 0.48[432] | 0.58[433] | 1.17[434] |
63 | U2AF1L4 | Splicing factor U2AF 26 kDa subunit | [435] | -1.31[436] | -1.32[437] | -0.71[438] | -0.47[439] | -0.99[440] | 0.88[441] |
64 | ZNF473 | Zinc finger protein 473 | [442] | 2.03[443] | 1.85[444] | 1.78[445] | 2.25[446] | 2.56[447] | 1.56[448] |
65 | LSM11 | U7 snRNA-associated Sm-like protein LSm11 | [449] | 0.72[450] | 0.95[451] | 0.47[452] | 1.76[453] | 1.45[454] | 0.63[455] |
66 | LUZP4 | Leucine zipper protein 4 | [456] | [457] | [458] | [459] | [460] | [461] | [462] |