REACTOME_POSITIVE_EPIGENETIC_REGULATION_OF_RRNA_EXPRESSION |
Return to index |
|
|
|
|
|
Order |
Gene |
Description |
ref_hepatocyte |
HepG2 |
HepG2.C3A |
HuH.7 |
SNU475 |
THLE |
liver |
1 |
ACTB |
Actin, cytoplasmic 1 |
[1] |
-0.82[2] |
-1.55[3] |
-1.00[4] |
-0.66[5] |
-0.91[6] |
-0.47[7] |
2 |
POLR2L |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
[8] |
-1.90[9] |
-1.96[10] |
-2.27[11] |
-1.87[12] |
-1.79[13] |
-0.62[14] |
3 |
CBX3 |
Chromobox protein homolog 3 |
[15] |
0.07[16] |
0.83[17] |
0.84[18] |
0.43[19] |
0.48[20] |
-1.47[21] |
4 |
POLR1D |
DNA-directed RNA polymerases I and III subunit RPAC2 |
[22] |
0.11[23] |
0.73[24] |
0.35[25] |
-1.45[26] |
-1.42[27] |
-1.87[28] |
5 |
POLR2E |
DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
[29] |
1.18[30] |
1.09[31] |
1.10[32] |
-0.24[33] |
0.76[34] |
1.20[35] |
6 |
POLR2H |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
[36] |
-1.00[37] |
-0.42[38] |
-0.53[39] |
-2.34[40] |
-1.52[41] |
-1.24[42] |
7 |
DDX21 |
Nucleolar RNA helicase 2 |
[43] |
1.31[44] |
2.19[45] |
1.58[46] |
0.99[47] |
1.43[48] |
0.77[49] |
8 |
SF3B1 |
Splicing factor 3B subunit 1 |
[50] |
1.58[51] |
2.93[52] |
2.11[53] |
1.79[54] |
1.68[55] |
2.40[56] |
9 |
DEK |
Protein DEK |
[57] |
0.49[58] |
2.18[59] |
0.99[60] |
1.43[61] |
1.37[62] |
0.13[63] |
10 |
POLR2F |
DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
[64] |
-0.69[65] |
-0.50[66] |
-1.40[67] |
-2.27[68] |
-1.40[69] |
-0.35[70] |
11 |
POLR2K |
DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
[71] |
-1.01[72] |
-0.21[73] |
-0.39[74] |
-0.63[75] |
-0.58[76] |
-0.56[77] |
12 |
RBBP7 |
Histone-binding protein RBBP7 |
[78] |
0.44[79] |
0.57[80] |
0.18[81] |
0.98[82] |
1.86[83] |
0.05[84] |
13 |
HDAC1 |
Histone deacetylase 1 |
[85] |
1.08[86] |
1.05[87] |
1.66[88] |
0.97[89] |
0.90[90] |
0.25[91] |
14 |
TAF1D |
TATA box-binding protein-associated
factor RNA polymerase I subunit D |
-1.17[92] |
0.57[93] |
0.07[94] |
-1.27[95] |
-1.41[96] |
-1.47[97] |
15 |
CHD4 |
Chromodomain-helicase-DNA-binding protein 4 |
[98] |
2.61[99] |
2.09[100] |
2.07[101] |
2.31[102] |
2.32[103] |
2.28[104] |
16 |
MYO1C |
Unconventional myosin-Ic |
[105] |
2.09[106] |
1.34[107] |
1.52[108] |
1.98[109] |
1.99[110] |
1.80[111] |
17 |
MTA1 |
Metastasis-associated protein MTA1 |
[112] |
0.87[113] |
0.74[114] |
0.81[115] |
0.23[116] |
0.23[117] |
-1.30[118] |
18 |
MTA2 |
Metastasis-associated protein MTA2 |
[119] |
1.59[120] |
0.71[121] |
0.98[122] |
0.95[123] |
1.32[124] |
0.29[125] |
19 |
MBD3 |
Methyl-CpG-binding domain protein 3 |
[126] |
1.04[127] |
1.56[128] |
0.65[129] |
0.02[130] |
1.15[131] |
0.63[132] |
20 |
POLR1C |
DNA-directed RNA polymerases I and III subunit RPAC1 |
[133] |
0.48[134] |
0.40[135] |
-0.81[136] |
-0.80[137] |
-0.43[138] |
-0.32[139] |
21 |
POLR1E |
DNA-directed RNA polymerase I subunit RPA49 |
[140] |
-0.13[141] |
-0.18[142] |
1.64[143] |
-1.25[144] |
0.14[145] |
0.03[146] |
22 |
GATAD2A |
Transcriptional repressor p66-alpha |
[147] |
1.73[148] |
0.89[149] |
2.16[150] |
0.61[151] |
1.62[152] |
0.77[153] |
23 |
BAZ1B |
Tyrosine-protein kinase BAZ1B |
[154] |
1.78[155] |
1.95[156] |
1.82[157] |
2.54[158] |
2.57[159] |
1.97[160] |
24 |
MTA3 |
Metastasis-associated protein MTA3 |
[161] |
1.10[162] |
0.75[163] |
-0.20[164] |
0.40[165] |
0.18[166] |
-0.94[167] |
25 |
RBBP4 |
Histone-binding protein RBBP4 |
[168] |
2.52[169] |
2.58[170] |
2.32[171] |
2.01[172] |
2.53[173] |
2.22[174] |
26 |
HDAC2 |
Histone deacetylase 2 |
[175] |
2.30[176] |
3.58[177] |
2.87[178] |
2.49[179] |
2.77[180] |
0.92[181] |
27 |
SMARCA5 |
SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A
member 5 |
1.89[182] |
2.42[183] |
2.64[184] |
2.18[185] |
2.88[186] |
2.26[187] |
28 |
TBP |
TATA-box-binding protein |
[188] |
0.35[189] |
0.60[190] |
-0.66[191] |
-0.75[192] |
0.18[193] |
-0.36[194] |
29 |
MYBBP1A |
Myb-binding protein 1A |
[195] |
2.48[196] |
1.64[197] |
1.73[198] |
1.27[199] |
1.61[200] |
1.20[201] |
30 |
KAT2A |
Histone acetyltransferase KAT2A |
[202] |
2.60[203] |
2.42[204] |
1.45[205] |
1.46[206] |
1.45[207] |
1.00[208] |
31 |
GSK3B |
Glycogen synthase kinase-3 beta |
[209] |
1.84[210] |
1.43[211] |
1.92[212] |
2.14[213] |
2.11[214] |
1.88[215] |
32 |
EHMT2 |
Histone-lysine N-methyltransferase EHMT2 |
[216] |
3.05[217] |
2.62[218] |
2.61[219] |
2.99[220] |
1.85[221] |
0.98[222] |
33 |
TAF1C |
TATA box-binding protein-associated
factor RNA polymerase I subunit C |
0.99[223] |
1.97[224] |
1.52[225] |
1.20[226] |
1.68[227] |
1.47[228] |
34 |
KAT2B |
Histone acetyltransferase KAT2B |
[229] |
-1.47[230] |
-2.64[231] |
-0.35[232] |
0.26[233] |
0.83[234] |
2.51[235] |
35 |
POLR1B |
DNA-directed RNA polymerase I subunit RPA2 |
[236] |
2.90[237] |
2.82[238] |
2.21[239] |
1.56[240] |
2.30[241] |
2.85[242] |
36 |
EP300 |
Histone acetyltransferase p300 |
[243] |
3.30[244] |
2.84[245] |
3.66[246] |
2.90[247] |
3.09[248] |
3.47[249] |
37 |
TAF1B |
TATA box-binding protein-associated
factor RNA polymerase I subunit B |
1.00[250] |
1.85[251] |
1.31[252] |
2.12[253] |
0.66[254] |
0.62[255] |
38 |
TTF1 |
Transcription termination factor 1 |
[256] |
0.31[257] |
0.75[258] |
1.27[259] |
1.21[260] |
1.62[261] |
0.41[262] |
39 |
POLR1A |
DNA-directed RNA polymerase I subunit RPA1 |
[263] |
4.08[264] |
3.08[265] |
2.83[266] |
2.94[267] |
3.10[268] |
2.96[269] |
40 |
TAF1A |
TATA box-binding protein-associated
factor RNA polymerase I subunit A |
-0.42[270] |
0.16[271] |
0.60[272] |
1.17[273] |
-0.11[274] |
-0.19[275] |
41 |
GATAD2B |
Transcriptional repressor p66-beta |
[276] |
2.21[277] |
1.78[278] |
3.13[279] |
3.11[280] |
3.05[281] |
2.84[282] |
42 |
CHD3 |
Chromodomain-helicase-DNA-binding protein 3 |
[283] |
3.37[284] |
3.93[285] |
5.98[286] |
6.63[287] |
5.94[288] |
3.24[289] |
43 |
ERCC6 |
DNA excision repair protein ERCC-6 |
[290] |
1.86[291] |
2.59[292] |
0.66[293] |
3.64[294] |
2.86[295] |
3.94[296] |
44 |
POLR1F |
|
[297] |
[298] |
[299] |
[300] |
[301] |
[302] |
[303] |
45 |
H3C12 |
|
[304] |
[305] |
[306] |
[307] |
[308] |
[309] |
[310] |
46 |
H2BC15 |
|
[311] |
[312] |
[313] |
[314] |
[315] |
[316] |
[317] |
47 |
H2AB1 |
|
[318] |
[319] |
[320] |
[321] |
[322] |
[323] |
[324] |
48 |
H4C11 |
|
[325] |
[326] |
[327] |
[328] |
[329] |
[330] |
[331] |
49 |
H4C4 |
|
[332] |
[333] |
[334] |
[335] |
[336] |
[337] |
[338] |
50 |
H4C8 |
|
[339] |
[340] |
[341] |
[342] |
[343] |
[344] |
[345] |
51 |
H2BC1 |
|
[346] |
[347] |
[348] |
[349] |
[350] |
[351] |
[352] |
52 |
H3C3 |
|
[353] |
[354] |
[355] |
[356] |
[357] |
[358] |
[359] |
53 |
H4C5 |
|
[360] |
[361] |
[362] |
[363] |
[364] |
[365] |
[366] |
54 |
H2AZ1 |
|
[367] |
[368] |
[369] |
[370] |
[371] |
[372] |
[373] |
55 |
H2BC6 |
|
[374] |
[375] |
[376] |
[377] |
[378] |
[379] |
[380] |
56 |
H2BC10 |
|
[381] |
[382] |
[383] |
[384] |
[385] |
[386] |
[387] |
57 |
H3C13 |
|
[388] |
[389] |
[390] |
[391] |
[392] |
[393] |
[394] |
58 |
H2BU1 |
|
[395] |
[396] |
[397] |
[398] |
[399] |
[400] |
[401] |
59 |
H3C10 |
|
[402] |
[403] |
[404] |
[405] |
[406] |
[407] |
[408] |
60 |
H2AC6 |
|
[409] |
[410] |
[411] |
[412] |
[413] |
[414] |
[415] |
61 |
H4C12 |
|
[416] |
[417] |
[418] |
[419] |
[420] |
[421] |
[422] |
62 |
H2BS1 |
|
[423] |
[424] |
[425] |
[426] |
[427] |
[428] |
[429] |
63 |
H4C9 |
|
[430] |
[431] |
[432] |
[433] |
[434] |
[435] |
[436] |
64 |
H3C11 |
|
[437] |
[438] |
[439] |
[440] |
[441] |
[442] |
[443] |
65 |
H3C4 |
|
[444] |
[445] |
[446] |
[447] |
[448] |
[449] |
[450] |
66 |
H3C8 |
|
[451] |
[452] |
[453] |
[454] |
[455] |
[456] |
[457] |
67 |
H4C3 |
|
[458] |
[459] |
[460] |
[461] |
[462] |
[463] |
[464] |
68 |
H2AZ2 |
|
[465] |
[466] |
[467] |
[468] |
[469] |
[470] |
[471] |
69 |
H2BC3 |
|
[472] |
[473] |
[474] |
[475] |
[476] |
[477] |
[478] |
70 |
H2AC7 |
|
[479] |
[480] |
[481] |
[482] |
[483] |
[484] |
[485] |
71 |
H4C13 |
|
[486] |
[487] |
[488] |
[489] |
[490] |
[491] |
[492] |
72 |
H3-3B |
|
[493] |
[494] |
[495] |
[496] |
[497] |
[498] |
[499] |
73 |
H2AC20 |
|
[500] |
[501] |
[502] |
[503] |
[504] |
[505] |
[506] |
74 |
H4-16 |
|
[507] |
[508] |
[509] |
[510] |
[511] |
[512] |
[513] |
75 |
H2BC7 |
|
[514] |
[515] |
[516] |
[517] |
[518] |
[519] |
[520] |
76 |
H2BC9 |
|
[521] |
[522] |
[523] |
[524] |
[525] |
[526] |
[527] |
77 |
POLR1G |
|
[528] |
[529] |
[530] |
[531] |
[532] |
[533] |
[534] |
78 |
H2AC8 |
|
[535] |
[536] |
[537] |
[538] |
[539] |
[540] |
[541] |
79 |
H2BC5 |
|
[542] |
[543] |
[544] |
[545] |
[546] |
[547] |
[548] |
80 |
H2AC14 |
|
[549] |
[550] |
[551] |
[552] |
[553] |
[554] |
[555] |
81 |
H4C15 |
|
[556] |
[557] |
[558] |
[559] |
[560] |
[561] |
[562] |
82 |
H4C1 |
|
[563] |
[564] |
[565] |
[566] |
[567] |
[568] |
[569] |
83 |
H2BC14 |
|
[570] |
[571] |
[572] |
[573] |
[574] |
[575] |
[576] |
84 |
H2BC8 |
|
[577] |
[578] |
[579] |
[580] |
[581] |
[582] |
[583] |
85 |
H2BC12 |
|
[584] |
[585] |
[586] |
[587] |
[588] |
[589] |
[590] |
86 |
H2BC13 |
|
[591] |
[592] |
[593] |
[594] |
[595] |
[596] |
[597] |
87 |
H4C2 |
|
[598] |
[599] |
[600] |
[601] |
[602] |
[603] |
[604] |
88 |
H3C14 |
|
[605] |
[606] |
[607] |
[608] |
[609] |
[610] |
[611] |
89 |
H2BC11 |
|
[612] |
[613] |
[614] |
[615] |
[616] |
[617] |
[618] |
90 |
H3C6 |
|
[619] |
[620] |
[621] |
[622] |
[623] |
[624] |
[625] |
91 |
H3C7 |
|
[626] |
[627] |
[628] |
[629] |
[630] |
[631] |
[632] |
92 |
H2AX |
|
[633] |
[634] |
[635] |
[636] |
[637] |
[638] |
[639] |
93 |
H3C1 |
|
[640] |
[641] |
[642] |
[643] |
[644] |
[645] |
[646] |
94 |
H3C15 |
|
[647] |
[648] |
[649] |
[650] |
[651] |
[652] |
[653] |
95 |
POLR1H |
|
[654] |
[655] |
[656] |
[657] |
[658] |
[659] |
[660] |
96 |
H3-3A |
|
[661] |
[662] |
[663] |
[664] |
[665] |
[666] |
[667] |
97 |
H3C2 |
|
[668] |
[669] |
[670] |
[671] |
[672] |
[673] |
[674] |
98 |
H2BC4 |
|
[675] |
[676] |
[677] |
[678] |
[679] |
[680] |
[681] |
99 |
H4C14 |
|
[682] |
[683] |
[684] |
[685] |
[686] |
[687] |
[688] |
100 |
H4C6 |
|
[689] |
[690] |
[691] |
[692] |
[693] |
[694] |
[695] |
101 |
H2AJ |
|
[696] |
[697] |
[698] |
[699] |
[700] |
[701] |
[702] |
102 |
H2BC21 |
|
[703] |
[704] |
[705] |
[706] |
[707] |
[708] |
[709] |
103 |
H2AC4 |
|
[710] |
[711] |
[712] |
[713] |
[714] |
[715] |
[716] |
104 |
H2BC17 |
|
[717] |
[718] |
[719] |
[720] |
[721] |
[722] |
[723] |
|
|
|
|
|
|
|
|
|
|