REACTOME_ABORTIVE_ELONGATION_OF_HIV_1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT Return to index
Order Gene Description ref_hepatocyte HepG2 HepG2.C3A HuH.7 SNU475 THLE liver
1 POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5 [1] -2.51[2] -2.50[3] -2.80[4] -1.74[5] -2.03[6] -0.73[7]
2 POLR2J DNA-directed RNA polymerase II subunit RPB11-a [8] -3.21[9] -2.90[10] -2.68[11] -2.96[12] -2.87[13] -2.48[14]
3 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 [15] 0.57[16] 0.55[17] 0.57[18] -0.10[19] 0.52[20] 1.08[21]
4 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 [22] -1.61[23] -0.96[24] -1.06[25] -2.21[26] -1.76[27] -1.35[28]
5 POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2 [29] -1.30[30] -1.04[31] -1.93[32] -2.14[33] -1.64[34] -0.46[35]
6 POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 [36] -1.62[37] -0.75[38] -0.92[39] -0.49[40] -0.82[41] -0.67[42]
7 POLR2G DNA-directed RNA polymerase II subunit RPB7 [43] -1.20[44] -0.90[45] -1.47[46] -0.69[47] -1.05[48] -1.22[49]
8 SUPT5H Transcription elongation factor SPT5 [50] 0.25[51] -0.04[52] 0.86[53] 0.90[54] 0.50[55] 0.26[56]
9 GTF2F2 General transcription factor IIF subunit 2 [57] -1.98[58] -1.33[59] -1.08[60] -1.66[61] -1.67[62] -1.98[63]
10 SUPT4H1 Transcription elongation factor SPT4 [64] -0.28[65] -0.17[66] -0.66[67] -1.18[68] -0.83[69] -1.22[70]
11 NCBP2 Nuclear cap-binding protein subunit 2 [71] -0.50[72] -0.02[73] -0.01[74] -0.41[75] -0.39[76] -0.73[77]
12 POLR2C DNA-directed RNA polymerase II subunit RPB3 [78] 0.79[79] 0.92[80] 0.34[81] 0.22[82] 0.22[83] 0.15[84]
13 POLR2I DNA-directed RNA polymerase II subunit RPB9 [85] -1.62[86] -1.47[87] -1.62[88] -1.81[89] -1.96[90] -0.43[91]
14 GTF2F1 General transcription factor IIF subunit 1 [92] 0.35[93] -0.03[94] 1.37[95] 0.07[96] 0.34[97] -0.66[98]
15 POLR2B DNA-directed RNA polymerase II subunit RPB2 [99] 1.18[100] 1.59[101] 1.45[102] 1.57[103] 2.03[104] 1.56[105]
16 POLR2D DNA-directed RNA polymerase II subunit RPB4 [106] 0.22[107] 0.37[108] -0.40[109] 0.06[110] 0.05[111] 0.17[112]
17 POLR2A DNA-directed RNA polymerase II subunit RPB1 [113] 2.70[114] 1.25[115] 2.18[116] 2.62[117] 2.77[118] 2.40[119]
18 NCBP1 Nuclear cap-binding protein subunit 1 [120] 1.22[121] 1.46[122] 1.21[123] 2.22[124] 2.52[125] 1.84[126]
19 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase [127] 1.31[128] 0.57[129] 0.50[130] 0.89[131] 0.88[132] 0.92[133]
20 NELFE Negative elongation factor E [134] [135] [136] [137] [138] [139] [140]
21 NELFCD Negative elongation factor C/D [141] [142] [143] [144] [145] [146] [147]
22 NELFA Negative elongation factor A [148] [149] [150] [151] [152] [153] [154]
23 NELFB Negative elongation factor B [155] [156] [157] [158] [159] [160] [161]
[1]
ref_hepatocyte POLR2L
Mean 67.8
Standard deviation 41
Values 12 45 1.2e+02 88 75
[2]
HepG2 POLR2L
Mean 26.9
Standard deviation 9.4
Values 20 34
[3]
HepG2.C3A POLR2L
Mean 23.8
Standard deviation 11
Values 16 31
[4]
HuH.7 POLR2L
Mean 19.4
Standard deviation 11
Values 20 8.1 30
[5]
SNU475 POLR2L
Mean 27.1
Standard deviation 4.2
Values 30 24
[6]
THLE POLR2L
Mean 29.2
Standard deviation 3.5
Values 27 32
[7]
liver POLR2L
Mean 38.1
Standard deviation 40
Values 74 3.8 71 3.9
[8]
ref_hepatocyte POLR2J
Mean 37.5
Standard deviation 21
Values 11 18 56 56 47
[9]
HepG2 POLR2J
Mean 9.2
Standard deviation 0.083
Values 9.3 9.1
[10]
HepG2.C3A POLR2J
Mean 10
Standard deviation 2.4
Values 8.3 12
[11]
HuH.7 POLR2J
Mean 11.7
Standard deviation 3.3
Values 12 8.1 15
[12]
SNU475 POLR2J
Mean 6.41
Standard deviation 0.42
Values 6.7 6.1
[13]
THLE POLR2J
Mean 9.03
Standard deviation 0.31
Values 9.2 8.8
[14]
liver POLR2J
Mean 6.28
Standard deviation 6.7
Values 14 0.84 9.4 0.7
[15]
ref_hepatocyte POLR2E
Mean 27.9
Standard deviation 6.6
Values 19 23 30 33 35
[16]
HepG2 POLR2E
Mean 93.8
Standard deviation 2.1
Values 95 92
[17]
HepG2.C3A POLR2E
Mean 81.1
Standard deviation 3.3
Values 83 79
[18]
HuH.7 POLR2E
Mean 82.6
Standard deviation 22
Values 97 58 93
[19]
SNU475 POLR2E
Mean 34.6
Standard deviation 3.7
Values 37 32
[20]
THLE POLR2E
Mean 70.5
Standard deviation 6.2
Values 66 75
[21]
liver POLR2E
Mean 55.3
Standard deviation 38
Values 84 18 92 27
[22]
ref_hepatocyte POLR2H
Mean 27.5
Standard deviation 6.8
Values 24 25 29 38 21
[23]
HepG2 POLR2H
Mean 20.4
Standard deviation 2.4
Values 19 22
[24]
HepG2.C3A POLR2H
Mean 28
Standard deviation 0.23
Values 28 28
[25]
HuH.7 POLR2H
Mean 26.4
Standard deviation 6.6
Values 24 21 34
[26]
SNU475 POLR2H
Mean 7.91
Standard deviation 0.017
Values 7.9 7.9
[27]
THLE POLR2H
Mean 14.3
Standard deviation 0.26
Values 14 14
[28]
liver POLR2H
Mean 10.1
Standard deviation 4.7
Values 14 6.5 14 5.4
[29]
ref_hepatocyte POLR2F
Mean 24.8
Standard deviation 6.1
Values 23 34 19 28 21
[30]
HepG2 POLR2F
Mean 22.8
Standard deviation 0.98
Values 22 23
[31]
HepG2.C3A POLR2F
Mean 23.9
Standard deviation 6.4
Values 19 28
[32]
HuH.7 POLR2F
Mean 13
Standard deviation 3.5
Values 13 9.7 17
[33]
SNU475 POLR2F
Mean 7.49
Standard deviation 0.4
Values 7.2 7.8
[34]
THLE POLR2F
Mean 14
Standard deviation 3
Values 12 16
[35]
liver POLR2F
Mean 16.8
Standard deviation 16
Values 36 4.2 24 2.4
[36]
ref_hepatocyte POLR2K
Mean 24.4
Standard deviation 5.5
Values 20 27 17 29 29
[37]
HepG2 POLR2K
Mean 17.9
Standard deviation 2.7
Values 16 20
[38]
HepG2.C3A POLR2K
Mean 28.8
Standard deviation 10
Values 22 36
[39]
HuH.7 POLR2K
Mean 25.7
Standard deviation 7.6
Values 25 19 34
[40]
SNU475 POLR2K
Mean 23.1
Standard deviation 3.2
Values 25 21
[41]
THLE POLR2K
Mean 24.3
Standard deviation 2.2
Values 23 26
[42]
liver POLR2K
Mean 14.3
Standard deviation 12
Values 26 5.3 23 3.1
[43]
ref_hepatocyte POLR2G
Mean 24.2
Standard deviation 8.6
Values 18 28 13 34 28
[44]
HepG2 POLR2G
Mean 23.8
Standard deviation 0.4
Values 24 24
[45]
HepG2.C3A POLR2G
Mean 25.8
Standard deviation 7.7
Values 20 31
[46]
HuH.7 POLR2G
Mean 17.4
Standard deviation 8.7
Values 15 10 27
[47]
SNU475 POLR2G
Mean 19.9
Standard deviation 4.4
Values 23 17
[48]
THLE POLR2G
Mean 20.5
Standard deviation 2.2
Values 19 22
[49]
liver POLR2G
Mean 9.68
Standard deviation 8.6
Values 14 2.8 20 2.3
[50]
ref_hepatocyte SUPT5H
Mean 23.3
Standard deviation 11
Values 19 34 35 16 12
[51]
HepG2 SUPT5H
Mean 62.7
Standard deviation 1.3
Values 64 62
[52]
HepG2.C3A SUPT5H
Mean 45.1
Standard deviation 7.3
Values 50 40
[53]
HuH.7 SUPT5H
Mean 84.5
Standard deviation 4.9
Values 90 81 83
[54]
SNU475 SUPT5H
Mean 58
Standard deviation 0.56
Values 58 58
[55]
THLE SUPT5H
Mean 57.9
Standard deviation 6.1
Values 54 62
[56]
liver SUPT5H
Mean 26.1
Standard deviation 8
Values 34 18 32 21
[57]
ref_hepatocyte GTF2F2
Mean 22.4
Standard deviation 20
Values 31 55 12 8.4 5.6
[58]
HepG2 GTF2F2
Mean 12.8
Standard deviation 1.9
Values 11 14
[59]
HepG2.C3A GTF2F2
Mean 17.7
Standard deviation 0.02
Values 18 18
[60]
HuH.7 GTF2F2
Mean 21.2
Standard deviation 3.4
Values 23 17 23
[61]
SNU475 GTF2F2
Mean 9.42
Standard deviation 1.8
Values 8.2 11
[62]
THLE GTF2F2
Mean 12.4
Standard deviation 1.8
Values 11 14
[63]
liver GTF2F2
Mean 5.3
Standard deviation 2.8
Values 8.4 3.5 6.8 2.5
[64]
ref_hepatocyte SUPT4H1
Mean 21.9
Standard deviation 5.8
Values 20 13 23 27 27
[65]
HepG2 SUPT4H1
Mean 41
Standard deviation 3.5
Values 39 43
[66]
HepG2.C3A SUPT4H1
Mean 38.8
Standard deviation 6.2
Values 34 43
[67]
HuH.7 SUPT4H1
Mean 27.8
Standard deviation 4.5
Values 26 24 33
[68]
SNU475 SUPT4H1
Mean 12.9
Standard deviation 1.4
Values 14 12
[69]
THLE SUPT4H1
Mean 21.8
Standard deviation 1.7
Values 21 23
[70]
liver SUPT4H1
Mean 8.82
Standard deviation 2.9
Values 11 6.7 11 6
[71]
ref_hepatocyte NCBP2
Mean 21.2
Standard deviation 13
Values 41 29 15 11 11
[72]
HepG2 NCBP2
Mean 33.8
Standard deviation 0.93
Values 33 34
[73]
HepG2.C3A NCBP2
Mean 41.6
Standard deviation 4.5
Values 45 38
[74]
HuH.7 NCBP2
Mean 42.1
Standard deviation 12
Values 45 29 53
[75]
SNU475 NCBP2
Mean 21.2
Standard deviation 3.1
Values 23 19
[76]
THLE NCBP2
Mean 28.5
Standard deviation 2.5
Values 27 30
[77]
liver NCBP2
Mean 11.9
Standard deviation 5.9
Values 15 7.7 19 6.3
[78]
ref_hepatocyte POLR2C
Mean 17.6
Standard deviation 4.3
Values 15 13 24 20 17
[79]
HepG2 POLR2C
Mean 68.6
Standard deviation 8
Values 63 74
[80]
HepG2.C3A POLR2C
Mean 66
Standard deviation 11
Values 58 74
[81]
HuH.7 POLR2C
Mean 44.6
Standard deviation 6.4
Values 45 38 51
[82]
SNU475 POLR2C
Mean 27.4
Standard deviation 1.2
Values 28 27
[83]
THLE POLR2C
Mean 36.1
Standard deviation 1
Values 37 35
[84]
liver POLR2C
Mean 18.3
Standard deviation 4.9
Values 20 16 24 13
[85]
ref_hepatocyte POLR2I
Mean 14.8
Standard deviation 8.2
Values 6.7 5.5 20 18 24
[86]
HepG2 POLR2I
Mean 10.9
Standard deviation 0.95
Values 12 10
[87]
HepG2.C3A POLR2I
Mean 10.6
Standard deviation 0.63
Values 10 11
[88]
HuH.7 POLR2I
Mean 9.58
Standard deviation 4.2
Values 9.6 5.4 14
[89]
SNU475 POLR2I
Mean 5.6
Standard deviation 1.6
Values 4.4 6.8
[90]
THLE POLR2I
Mean 6.67
Standard deviation 0.3
Values 6.9 6.5
[91]
liver POLR2I
Mean 10.3
Standard deviation 10
Values 20 2.1 19 0.83
[92]
ref_hepatocyte GTF2F1
Mean 14.3
Standard deviation 3.7
Values 14 17 18 14 8.5
[93]
HepG2 GTF2F1
Mean 41.2
Standard deviation 6.7
Values 46 36
[94]
HepG2.C3A GTF2F1
Mean 27.7
Standard deviation 6.3
Values 32 23
[95]
HuH.7 GTF2F1
Mean 73.5
Standard deviation 6.5
Values 81 71 68
[96]
SNU475 GTF2F1
Mean 19.9
Standard deviation 2.9
Values 18 22
[97]
THLE GTF2F1
Mean 31.8
Standard deviation 5
Values 28 35
[98]
liver GTF2F1
Mean 8.41
Standard deviation 2.9
Values 9.6 6.7 12 5.4
[99]
ref_hepatocyte POLR2B
Mean 11.1
Standard deviation 5.1
Values 14 19 8.6 7.8 6.5
[100]
HepG2 POLR2B
Mean 56.9
Standard deviation 17
Values 45 69
[101]
HepG2.C3A POLR2B
Mean 66.2
Standard deviation 18
Values 54 79
[102]
HuH.7 POLR2B
Mean 60.6
Standard deviation 7.6
Values 65 52 65
[103]
SNU475 POLR2B
Mean 43.8
Standard deviation 2.4
Values 42 46
[104]
THLE POLR2B
Mean 79.8
Standard deviation 7.8
Values 74 85
[105]
liver POLR2B
Mean 30.4
Standard deviation 5.1
Values 27 37 26 33
[106]
ref_hepatocyte POLR2D
Mean 10.5
Standard deviation 5.2
Values 17 13 12 6.5 4.1
[107]
HepG2 POLR2D
Mean 27.7
Standard deviation 1.1
Values 27 29
[108]
HepG2.C3A POLR2D
Mean 27
Standard deviation 7.8
Values 22 33
[109]
HuH.7 POLR2D
Mean 15.9
Standard deviation 5.1
Values 19 10 19
[110]
SNU475 POLR2D
Mean 14.6
Standard deviation 0.75
Values 14 15
[111]
THLE POLR2D
Mean 19.2
Standard deviation 4.2
Values 16 22
[112]
liver POLR2D
Mean 11
Standard deviation 2.8
Values 13 8.6 14 8.7
[113]
ref_hepatocyte POLR2A
Mean 7.79
Standard deviation 4.5
Values 9.5 5.3 15 4.9 4.5
[114]
HepG2 POLR2A
Mean 114
Standard deviation 23
Values 98 1.3e+02
[115]
HepG2.C3A POLR2A
Mean 37
Standard deviation 6.8
Values 32 42
[116]
HuH.7 POLR2A
Mean 70.7
Standard deviation 33
Values 1.1e+02 40 66
[117]
SNU475 POLR2A
Mean 63.7
Standard deviation 8.3
Values 70 58
[118]
THLE POLR2A
Mean 93.7
Standard deviation 26
Values 75 1.1e+02
[119]
liver POLR2A
Mean 38.4
Standard deviation 3.6
Values 41 33 40 40
[120]
ref_hepatocyte NCBP1
Mean 5.21
Standard deviation 2.7
Values 8.1 8.2 2.7 3.9 3.2
[121]
HepG2 NCBP1
Mean 27.5
Standard deviation 12
Values 19 36
[122]
HepG2.C3A NCBP1
Mean 28.5
Standard deviation 8.5
Values 23 35
[123]
HuH.7 NCBP1
Mean 24.1
Standard deviation 6.3
Values 30 17 25
[124]
SNU475 NCBP1
Mean 32.3
Standard deviation 2.4
Values 31 34
[125]
THLE NCBP1
Mean 52.8
Standard deviation 5
Values 49 56
[126]
liver NCBP1
Mean 17.5
Standard deviation 5.4
Values 11 24 15 19
[127]
ref_hepatocyte CTDP1
Mean 3.31
Standard deviation 1.5
Values 3 2.4 5.8 3.2 2.1
[128]
HepG2 CTDP1
Mean 18.5
Standard deviation 0.96
Values 19 18
[129]
HepG2.C3A CTDP1
Mean 9.73
Standard deviation 1.6
Values 11 8.6
[130]
HuH.7 CTDP1
Mean 9.33
Standard deviation 0.9
Values 10 8.8 8.8
[131]
SNU475 CTDP1
Mean 8.19
Standard deviation 0.17
Values 8.3 8.1
[132]
THLE CTDP1
Mean 10.7
Standard deviation 0.44
Values 10 11
[133]
liver CTDP1
Mean 5.86
Standard deviation 3.8
Values 3.2 8.2 2.1 9.9
[134]
ref_hepatocyte NELFE
Missing
[135]
HepG2 NELFE
Mean 38.8
Standard deviation 0.17
Values 39 39
[136]
HepG2.C3A NELFE
Mean 34.9
Standard deviation 1.5
Values 34 36
[137]
HuH.7 NELFE
Mean 32.2
Standard deviation 10
Values 35 21 40
[138]
SNU475 NELFE
Mean 39.1
Standard deviation 1.6
Values 38 40
[139]
THLE NELFE
Mean 24.8
Standard deviation 2.4
Values 23 26
[140]
liver NELFE
Mean 5.76
Standard deviation 2.4
Values 8.3 4 7.3 3.4
[141]
ref_hepatocyte NELFCD
Missing
[142]
HepG2 NELFCD
Mean 91.8
Standard deviation 1.8
Values 93 91
[143]
HepG2.C3A NELFCD
Mean 91.5
Standard deviation 0.07
Values 92 91
[144]
HuH.7 NELFCD
Mean 33.8
Standard deviation 13
Values 40 19 42
[145]
SNU475 NELFCD
Mean 24.7
Standard deviation 4.1
Values 28 22
[146]
THLE NELFCD
Mean 25
Standard deviation 4.4
Values 22 28
[147]
liver NELFCD
Mean 21.7
Standard deviation 8.2
Values 25 19 31 12
[148]
ref_hepatocyte NELFA
Missing
[149]
HepG2 NELFA
Mean 14.7
Standard deviation 3.5
Values 17 12
[150]
HepG2.C3A NELFA
Mean 11.4
Standard deviation 3.3
Values 14 9.1
[151]
HuH.7 NELFA
Mean 31.8
Standard deviation 4.9
Values 34 26 35
[152]
SNU475 NELFA
Mean 10.9
Standard deviation 0.2
Values 11 11
[153]
THLE NELFA
Mean 7.27
Standard deviation 0.75
Values 6.7 7.8
[154]
liver NELFA
Mean 4.32
Standard deviation 2.3
Values 6.7 1.9 5.8 3
[155]
ref_hepatocyte NELFB
Missing
[156]
HepG2 NELFB
Mean 45.4
Standard deviation 0.54
Values 46 45
[157]
HepG2.C3A NELFB
Mean 34
Standard deviation 1.1
Values 35 33
[158]
HuH.7 NELFB
Mean 35.6
Standard deviation 11
Values 39 23 44
[159]
SNU475 NELFB
Mean 24.7
Standard deviation 0.29
Values 25 24
[160]
THLE NELFB
Mean 26.9
Standard deviation 6.7
Values 22 32
[161]
liver NELFB
Mean 6
Standard deviation 2.1
Values 5.8 7.6 3.1 7.5