KEGG_RNA_DEGRADATION | Return to index | ||||||||
Order | Gene | Description | ref_hepatocyte | HepG2 | HepG2.C3A | HuH.7 | SNU475 | THLE | liver |
1 | ENO1 | Alpha-enolase | [1] | 0.50[2] | 0.47[3] | 0.07[4] | 0.71[5] | 0.19[6] | -0.85[7] |
2 | HSPD1 | 60 kDa heat shock protein, mitochondrial | [8] | -0.54[9] | -0.05[10] | -0.72[11] | -1.63[12] | -1.25[13] | -0.46[14] |
3 | HSPA9 | Stress-70 protein, mitochondrial | [15] | -0.34[16] | -0.92[17] | -0.49[18] | -0.92[19] | -0.21[20] | 0.92[21] |
4 | LSM3 | U6 snRNA-associated Sm-like protein LSm3 | [22] | -2.29[23] | -2.22[24] | -1.64[25] | -2.08[26] | -1.34[27] | -1.22[28] |
5 | LSM4 | U6 snRNA-associated Sm-like protein LSm4 | [29] | -0.84[30] | -0.70[31] | 0.63[32] | -1.37[33] | -0.06[34] | -0.80[35] |
6 | LSM2 | U6 snRNA-associated Sm-like protein LSm2 | [36] | -1.75[37] | -2.14[38] | -1.71[39] | -1.78[40] | -1.97[41] | -3.16[42] |
7 | LSM7 | U6 snRNA-associated Sm-like protein LSm7 | [43] | -1.74[44] | -1.57[45] | -1.75[46] | -2.90[47] | -2.24[48] | -2.71[49] |
8 | LSM1 | U6 snRNA-associated Sm-like protein LSm1 | [50] | -2.26[51] | -2.60[52] | -1.66[53] | -2.34[54] | -1.89[55] | -1.53[56] |
9 | ENO3 | Beta-enolase | [57] | -2.47[58] | -2.84[59] | -4.47[60] | -2.08[61] | -5.29[62] | -0.33[63] |
10 | CNOT7 | CCR4-NOT transcription complex subunit 7 | [64] | -0.34[65] | -0.32[66] | 0.55[67] | -0.58[68] | -0.28[69] | 0.40[70] |
11 | PAPOLA | Poly(A) polymerase alpha | [71] | 0.45[72] | 1.00[73] | 1.46[74] | 1.67[75] | 1.62[76] | 1.42[77] |
12 | WDR61 | WD repeat-containing protein 61 | [78] | -1.24[79] | -1.72[80] | -1.18[81] | -1.38[82] | -1.07[83] | -0.43[84] |
13 | EXOSC4 | Exosome complex component RRP41 | [85] | -1.73[86] | -1.86[87] | -2.06[88] | -1.78[89] | -2.22[90] | -1.17[91] |
14 | EXOSC7 | Exosome complex component RRP42 | [92] | -1.57[93] | -2.07[94] | -1.06[95] | -2.65[96] | -1.46[97] | -1.34[98] |
15 | C1D | Nuclear nucleic acid-binding protein C1D | [99] | -1.93[100] | -1.70[101] | -1.55[102] | -1.55[103] | -1.40[104] | -0.90[105] |
16 | XRN2 | 5'-3' exoribonuclease 2 | [106] | 1.58[107] | 1.11[108] | 1.65[109] | 1.48[110] | 1.05[111] | 1.15[112] |
17 | EXOSC3 | Exosome complex component RRP40 | [113] | -1.32[114] | -1.91[115] | -0.75[116] | -1.87[117] | -0.97[118] | -1.31[119] |
18 | MPHOSPH | M-phase phosphoprotein 6 | [120] | -1.52[121] | -1.96[122] | -1.08[123] | -2.28[124] | -0.27[125] | -2.15[126] |
19 | LSM6 | U6 snRNA-associated Sm-like protein LSm6 | [127] | -2.33[128] | -2.82[129] | -1.96[130] | -2.79[131] | -2.12[132] | -1.84[133] |
20 | EXOSC9 | Exosome complex component RRP45 | [134] | -1.54[135] | -1.59[136] | -1.68[137] | -1.38[138] | 0.54[139] | -1.63[140] |
21 | LSM5 | U6 snRNA-associated Sm-like protein LSm5 | [141] | -0.49[142] | 0.01[143] | 0.17[144] | -0.62[145] | -0.19[146] | -0.14[147] |
22 | EXOSC10 | Exosome component 10 | [148] | 0.18[149] | 0.54[150] | 0.52[151] | 0.94[152] | 0.96[153] | 0.19[154] |
23 | EXOSC5 | Exosome complex component RRP46 | [155] | -1.15[156] | -1.61[157] | -0.10[158] | -1.85[159] | -1.18[160] | -0.56[161] |
24 | CNOT8 | CCR4-NOT transcription complex subunit 8 | [162] | 0.13[163] | 0.23[164] | 1.29[165] | 0.37[166] | 0.83[167] | 0.26[168] |
25 | CNOT1 | CCR4-NOT transcription complex subunit 1 | [169] | 2.70[170] | 2.32[171] | 3.20[172] | 2.40[173] | 3.22[174] | 3.08[175] |
26 | PARN | Poly(A)-specific ribonuclease PARN | [176] | 0.72[177] | -0.42[178] | -0.33[179] | 0.02[180] | 0.21[181] | 0.44[182] |
27 | DDX6 | Probable ATP-dependent RNA helicase DDX6 | [183] | 1.30[184] | 0.42[185] | 1.08[186] | 2.14[187] | 1.85[188] | 2.27[189] |
28 | DCPS | m7GpppX diphosphatase | [190] | -0.99[191] | -1.91[192] | -1.77[193] | -0.27[194] | -1.10[195] | 0.63[196] |
29 | EXOSC2 | Exosome complex component RRP4 | [197] | 0.02[198] | -0.64[199] | 0.11[200] | -0.27[201] | 0.91[202] | -0.19[203] |
30 | CNOT2 | CCR4-NOT transcription complex subunit 2 | [204] | 0.10[205] | 0.41[206] | 0.80[207] | 0.88[208] | 0.97[209] | 1.26[210] |
31 | EXOSC1 | Exosome complex component CSL4 | [211] | -0.30[212] | -0.11[213] | 0.63[214] | -0.84[215] | 0.31[216] | -0.45[217] |
32 | EXOSC6 | Exosome complex component MTR3 | [218] | -0.43[219] | -0.90[220] | -1.68[221] | -0.99[222] | -0.17[223] | -0.13[224] |
33 | CNOT3 | CCR4-NOT transcription complex subunit 3 | [225] | -0.02[226] | -0.78[227] | 0.91[228] | 0.65[229] | 0.58[230] | -0.84[231] |
34 | SKIV2L | Helicase SKI2W | [232] | 1.62[233] | 1.11[234] | 0.90[235] | 2.17[236] | 1.39[237] | 2.10[238] |
35 | EXOSC8 | Exosome complex component RRP43 | [239] | -0.06[240] | 0.27[241] | 0.90[242] | -0.67[243] | 0.62[244] | -0.16[245] |
36 | EDC4 | Enhancer of mRNA-decapping protein 4 | [246] | 1.41[247] | 1.01[248] | 1.57[249] | 1.62[250] | 1.70[251] | 1.44[252] |
37 | PNPT1 | Polyribonucleotide nucleotidyltransferase 1, mitochondrial | [253] | 0.72[254] | 0.87[255] | 1.50[256] | 0.50[257] | 1.51[258] | 1.45[259] |
38 | TTC37 | Tetratricopeptide repeat protein 37 | [260] | 0.42[261] | 1.85[262] | 1.73[263] | 2.45[264] | 2.44[265] | 3.19[266] |
39 | PATL1 | Protein PAT1 homolog 1 | [267] | 1.04[268] | 0.40[269] | 2.58[270] | 1.71[271] | 2.09[272] | 1.58[273] |
40 | CNOT10 | CCR4-NOT transcription complex subunit 10 | [274] | -0.10[275] | 0.11[276] | 1.59[277] | 0.15[278] | 1.16[279] | 0.85[280] |
41 | CNOT4 | CCR4-NOT transcription complex subunit 4 | [281] | -0.88[282] | -1.40[283] | -0.29[284] | 0.22[285] | 0.28[286] | 1.03[287] |
42 | ZCCHC7 | Zinc finger CCHC domain-containing protein 7 | [288] | -0.66[289] | -0.01[290] | 1.84[291] | -0.73[292] | 0.08[293] | 0.87[294] |
43 | EDC3 | Enhancer of mRNA-decapping protein 3 | [295] | 1.39[296] | 0.62[297] | 1.90[298] | 1.91[299] | 1.80[300] | 0.94[301] |
44 | DIS3 | Exosome complex exonuclease RRP44 | [302] | 0.69[303] | 1.22[304] | 2.34[305] | 1.86[306] | 2.14[307] | 2.46[308] |
45 | DCP1B | mRNA-decapping enzyme 1B | [309] | 0.12[310] | -0.52[311] | 0.37[312] | -1.11[313] | -0.18[314] | 0.07[315] |
46 | DCP1A | mRNA-decapping enzyme 1A | [316] | 1.61[317] | 1.50[318] | 1.37[319] | 1.44[320] | 2.56[321] | 3.26[322] |
47 | ENO2 | Gamma-enolase | [323] | 4.39[324] | 2.66[325] | 0.90[326] | 2.71[327] | 3.92[328] | -1.22[329] |
48 | CNOT6L | CCR4-NOT transcription complex subunit 6-like | [330] | 1.17[331] | 1.80[332] | 1.89[333] | 1.65[334] | 2.12[335] | 3.62[336] |
49 | DCP2 | m7GpppN-mRNA hydrolase | [337] | 1.58[338] | 2.81[339] | 2.40[340] | 2.50[341] | 2.62[342] | 3.71[343] |
50 | CNOT6 | CCR4-NOT transcription complex subunit 6 | [344] | 2.26[345] | 2.11[346] | 3.44[347] | 3.10[348] | 3.17[349] | 2.15[350] |
51 | XRN1 | 5'-3' exoribonuclease 1 | [351] | 0.63[352] | 1.66[353] | 2.48[354] | 3.01[355] | 3.11[356] | 5.00[357] |
52 | PAPOLG | Poly(A) polymerase gamma | [358] | 1.23[359] | 1.40[360] | 2.02[361] | 1.74[362] | 2.30[363] | 2.42[364] |
53 | PAPOLB | Poly(A) polymerase beta | [365] | [366] | [367] | [368] | [369] | [370] | [371] |
54 | C1DP3 | [372] | [373] | [374] | [375] | [376] | [377] | [378] | |
55 | CNOT9 | CCR4-NOT transcription complex subunit 9 | [379] | [380] | [381] | [382] | [383] | [384] | [385] |
56 | TENT4A | [386] | [387] | [388] | [389] | [390] | [391] | [392] | |
57 | MTREX | [393] | [394] | [395] | [396] | [397] | [398] | [399] | |
58 | C1DP2 | [400] | [401] | [402] | [403] | [404] | [405] | [406] | |
59 | LSM8 | U6 snRNA-associated Sm-like protein LSm8 | [407] | [408] | [409] | [410] | [411] | [412] | [413] |