- The standard, reverse and total Quasi-Steady-State Approximations revised: Timescale, small parameters, normal forms and singularities in enzyme kinetics
- Characteristic, completion or matching timescales? An analysis of temporary boundaries in enzyme kinetics
- Have we come to the end of theoretical and mathematical biology?
- Information processing by endoplasmic reticulum stress sensors
- Disorder Atlas: A web software for the proteome-based interpretation of intrinsic disorder predictions
- Steady-state kinetics of the autocatalytic zymogen activation: A comparison with the Michaelis-Menten reaction mechanism
- Clathrin heavy chain knockdown impacts CXCR4 signaling and post-translational modification
- Dynamic recruitment of single RNAs to processing bodies depends on RNA functionality
- Enhancing career development of postdoctoral trainees: Act locally and beyond
- On the need to develop guidelines for characterizing and reporting intrinsic disorder in proteins
- Changes in both neuron intrinsic properties and neurotransmission are needed to drive the increase in GnRH neuron firing rate during estradiol positive feedback
- 'Reproducible' research in mathematical sciences requires changes in our peer review culture and modernization of our current publication approach
- A kinetic analysis of coupled (or auxiliary) enzyme reactions
- How to design an optimal sensor network for the unfolded protein response
- Phase-plane geometries in coupled enzyme assays
- A theory of reactant-stationary kinetics for a mechanism of zymogen activation
- An empirical analysis of enzyme function reporting for experimental reproducibility: Missing/incomplete information in published papers
- Radial WNT5A-guided post-mitotic filopodial pathfinding is critical for midgut tube elongation
- Do cellular condensates accelerate biochemical reactions? Lessons from microdroplet chemistry
- Predicting neuroblastoma using developmental signals and a logic-based model
- STRENDA DB: enabling the validation and sharing of enzyme kinetics data
- Inferring intracellular signal transduction circuitry from molecular perturbation experiments
- Gonadotropin-Releasing Hormone (GnRH) neuron excitability is regulated by estradiol feedback and kisspeptin
- On the origin of non-membrane-bound organelles, and their physiological function
- Globalization and changing trends of biomedical research output
- Approaches for the estimation of timescales in nonlinear dynamical systems: Timescale separation in enzyme kinetics as a case study
- On the validity and errors of the pseudo-first-order kinetics in ligand-receptor binding
- Novel hybrid phenotype revealed in small cell lung cancer by a transcription factor network model that can explain tumor heterogeneity
- The importance of accurately correcting for the natural abundance of stable isotopes
- On the estimation errors of $K_M$ and $V$ from time-course experiments using the Michaelis-Menten equation
- Coordination of signaling and tissue mechanics during morphogenesis of murine intestinal villi: A role for mitotic cell rounding
- Estimation of the lag time in a subsequent monomer addition model for fibril elongation
- RhoC GTPase is a potent regulator of glutamine metabolism and N-acetylaspartate production in inflammatory breast cancer cells
- A collection of intrinsic disorder characterizations from eukaryotic proteomes
- Quantitative proteome-based guidelines for intrinsic disorder characterization
- A computational approach to studying ageing at the individual level
- Loss of the ubiquitin-conjugating enzyme UBE2W results in susceptibility to early postnatal lethality and defects in skin, immune, and male reproductive systems
- Villification in the mouse: BMP signals control intestinal villus patterning
- Rethinking models of pattern formation in somitogenesis
- Ten simple rules for a computational biologist's laboratory notebook
- Evidence for residual and partly reparable insulin secretory function and maintained beta-cell gene expression in islets from patients with type 1 diabetes
- Unraveling the contribution of pancreatic beta-cell suicide in autoimmune type 1 diabetes
- Development, growth and maintenance of beta-cell mass: Models are also part of the story
- Molecular aspects of pancreatic beta cell failure and diabetes
- Connecting the dots: The effects of macromolecular crowding on cell physiology
- Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study
- Surveying the floodgates: Estimating protein flux into the endoplasmic reticulum lumen in Saccharomyces cerevisiae
- Inferring the effects of Honokiol on the Notch signaling pathway in SW480 colon cancer cells
- Competitive inhibition reaction mechanisms for the two-step model of protein aggregation
- Optimal experimental design to estimate statistically significant periods of oscillations in time course data
- Unravelling the impact of obstacles in diffusion and kinetics of an enzyme catalysed reaction
- Single-molecule enzymology a la Michaelis-Menten
- A two-step kinetic model of insulin aggregation with a competitive inhibitor
- The circadian clock in oral health and diseases
- Validity of the Michaelis-Menten equation-steady-state or reactant stationary assumption: that is the question
- Network representations and methods for the analysis of chemical and biochemical pathways
- Integration of steady-state and temporal gene expression data for the inference of gene regulatory networks
- Circadian rhythms regulate amelogenesis
- Follow-the-leader cell migration requires biased cell-cell contact and local microenvironmental signals
- Designing nanoparticle treatment of autoimmunity with quantitative biology
- Network motifs provide signatures that characterize metabolism
- More than skew: asymmetric wave propagation in a reaction-diffusion-convection systems
- Logic-based models in systems biology: network analysis method
- The art of mathematical biology: A foreword for the launch of BIOMATH
- Hedgehog-responsive mesenchymal clusters direct patterning and emergence of intestinal villi
- Computational modelling of cell chain migration reveals mechanisms that sustain follow-the-leader behaviour
- Unraveling the complex regulatory relationships between metabolism and signal transduction in cancer
- Molecular and circadian controls of ameloblasts
- A graphical user interface for a method to infer kinetics and network architecture (MIKANA)
- Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology
- A model of threshold behavior reveals rescue mechanisms of bystander proteins in conformational diseases
- Expression of clock proteins in developing tooth
- Effects of protein quality control machinery on protein homeostasis
- Stability of open pathways
- Enzyme catalyzed reactions: From experiment to computational mechanism reconstruction
- Systems biologists seek fuller integration of systems biology approaches in new cancer research programs
- A model of the unfolded protein response: Pancreatic beta-cell as a case study
- Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies
- How can mathematics help us explore vertebrate segmentation?
- Modelling reaction kinetics inside cells
- Reactant stationary approximation in enzyme kinetics
- Formation of monocarboxylic acids and polyols on a graphite surface
- Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick
- Limit cycles in the presence of convection: a first-order analysis
- Mathematical models for somite formation
- Multiscale Modeling of Developmental Systems
- The intranuclear environment
- Limit cycles in the presence of convection: A traveling wave analysis
- Turing pattern outside of the Turing domain
- Can tissue surface tension drive somite formation?
- A mesoscopic simulation approach for modeling intracellular reactions
- From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks
- Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein-protein interaction networks?
- Multiscale modeling in biology
- Reconstructing biochemical pathways from time course data
- A test for measuring the effects of enzyme inactivation
- The effects of time delays in a phosphorylation-dephosphorylation pathway
- A systematic investigation of the rate laws valid in intracellular environments
- Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
- How reaction kinetics with time-dependent rate coefficients differs from generalized mass action
- Unravelling the function and kinetics of biochemical networks
- Use and abuse of the quasi-steady-state approximation
- Book Review: Computational Modeling of Genetic and Biochemical Networks
- Why substrate depletion has apparent first-order kinetics in enzymatic digestion
- A clock and wavefront mechanism for somite formation
- A mathematical investigation of a Clock and Wavefront model for somitogenesis
- A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies
- The mechanism distinguishability problem in biochemical kinetics: The single-enzyme, single-substrate reaction as a case study
- Extracting biochemical reaction kinetics from time series data
- Mathematical and computational techniques to deduce complex biochemical reaction mechanisms
- New approaches to modelling and analysis of biochemical reactions, pathways and networks
- Bulletin of mathematical biology - Facts, figures and comparisons
- Stochastic approaches for modelling in vivo reactions
- A mathematical formulation for the cell-cycle model in somitogenesis: Analysis, parameter constraints and numerical solutions
- Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws
- Book Review: Parametric Sensitivity in Chemical Systems
- Mechanism equivalence in enzyme-substrate reactions: Distributed differential delay in enzyme kinetics
- The condition for pseudo-first-order kinetics in enzymatic reactions is independent of the initial enzyme concentration
- Formation of vertebral precursors: Past models and future predictions
- A century of enzyme kinetics: Reliability of the $K_M$ and $v_{max}$ estimates
- Book Review: Computational Cell Biology
- Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology
- Enzyme kinetics far from the standard quasi-steady-state and equilibrium approximations
- A fast method to estimate kinetic constants for enzyme inhibitors
- A cell cycle model for somitogenesis: Mathematical formulation and numerical simulation
- Enzyme kinetics at high enzyme concentration
- Clock and induction model for somitogenesis
- A formula for integrating inverse functions
- Time-dependent closed form solutions for fully competitive enzyme reactions
- Enzyme kinetics of multiple alternative substrates
- Spatiotemporal pattern formation in early development: A review of primitive streak formation and somitogenesis
- Theoretical description of the polymerase chain reaction
- Closed form solution for time-dependent enzyme kinetics
- Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR)
- A quantitative description of the competitive polymerase chain reaction
- Expression of sodium-channels with different affinity during rat forebrain development

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